PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g029800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | LBD | ||||||||
Protein Properties | Length: 158aa MW: 17411.5 Da PI: 6.0011 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 85.6 | 6.7e-27 | 5 | 103 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +Ca C+ l++ C ++C++ yfp+++ +f+ v+++FGa++v +l++l +eeer++a++sl+y Aear rdP +G +g++++ ++ l+ +++e+ Csa12g029800.1 5 RCAICRALKQICDPNCIYKAYFPSND-TRFEDVQQIFGAAKVADILNRLgSEEERKIAANSLCYAAEARRRDPNSGIYGMVQHHESILNDVEQEI 98 6**********************998.89********************77777****************************************9 PP DUF260 95 allke 99 + + + Csa12g029800.1 99 KFAVN 103 98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.855 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.8E-25 | 5 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MNSNRCAICR ALKQICDPNC IYKAYFPSND TRFEDVQQIF GAAKVADILN RLGSEEERKI 60 AANSLCYAAE ARRRDPNSGI YGMVQHHESI LNDVEQEIKF AVNELKTNVG PDQVPKFFHV 120 PIPDDFLTTS GKMGDGHRVD DASTSAGPSA TLPKNHE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-15 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-15 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g029800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010451208.1 | 1e-116 | PREDICTED: LOB domain-containing protein 32-like | ||||
Swissprot | O49651 | 4e-48 | LBD32_ARATH; LOB domain-containing protein 32 | ||||
TrEMBL | R0GTP6 | 4e-69 | R0GTP6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010451208.1 | 1e-115 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4525 | 14 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22700.1 | 2e-50 | LOB domain-containing protein 32 |