PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G22700.1 | ||||||||
Common Name | ASL26, LBD32, T12H17.90 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | LBD | ||||||||
Protein Properties | Length: 192aa MW: 21286.4 Da PI: 4.9973 | ||||||||
Description | LOB domain-containing protein 32 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 94.3 | 1.3e-29 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalp.eeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +Ca+Ck+l+++Ca+ C++ap+fp+++ ++f+++ ++FGa nv+++l++l+ +e+re+a+++l y Aear+r+P++G++ +il++++ l++++++++++ AT4G22700.1 5 RCAVCKILNETCAPMCIYAPHFPSND-ASFKVIIQIFGAVNVCNILDNLEfPEQREIAANCLRYAAEARIRNPISGCHDMILQYKNILNNVEQDIESA 101 6**********************998.89********************63777***************************************99987 PP DUF260 98 kee 100 +e AT4G22700.1 102 VNE 104 665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.584 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.2E-26 | 5 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008150 | Biological Process | biological_process |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MASNRCAVCK ILNETCAPMC IYAPHFPSND ASFKVIIQIF GAVNVCNILD NLEFPEQREI 60 AANCLRYAAE ARIRNPISGC HDMILQYKNI LNNVEQDIES AVNELGTYVG HDQVPKFYDL 120 PMPDDFLMTP VSLDSFIAKI KSLNEVQKNQ LMQLPTAADN APMIMNSIFG KMEDKNLKDG 180 HRADGASTSA GK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-19 | 2 | 108 | 8 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-19 | 2 | 108 | 8 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 240256039 | 0.0 | ||||
Genevisible | 254330_at | 0.0 | ||||
Expression Atlas | AT4G22700 | - | ||||
AtGenExpress | AT4G22700 | - | ||||
ATTED-II | AT4G22700 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G22700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G22700 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473859 | 0.0 | AB473859.1 Arabidopsis thaliana ASL26 mRNA for ASYMMETRIC LEAVES2-like 26 protein, complete cds. | |||
GenBank | AL021635 | 0.0 | AL021635.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T12H17 (ESSAII project). | |||
GenBank | AL161557 | 0.0 | AL161557.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 57. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | DQ056654 | 0.0 | DQ056654.1 Arabidopsis thaliana LOB domain family protein (At4g22700) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_194001.1 | 1e-142 | LOB domain-containing protein 32 | ||||
Swissprot | O49651 | 1e-143 | LBD32_ARATH; LOB domain-containing protein 32 | ||||
TrEMBL | A0A178UXH5 | 1e-137 | A0A178UXH5_ARATH; LBD32 | ||||
STRING | AT4G22700.1 | 1e-141 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4525 | 14 | 55 |
Link Out ? help Back to Top | |
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Phytozome | AT4G22700.1 |
Entrez Gene | 828366 |
iHOP | AT4G22700 |
wikigenes | AT4G22700 |
Publications ? help Back to Top | |||
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