PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa12g025890.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HRT-like

Protein Properties

Length: 411aa MW: 45906.1 Da PI: 9.6208

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa12g025890.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	53.4	4.2e-17	205	234	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CG++ledG++C+++P+kgRKRC eHKG++ Csa12g025890.1 205 VCGLLLEDGTTCNTTPIKGRKRCTEHKGKK 234 7***************************98 PP
2	HRT-like	46.9	4.7e-15	261	291	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGvil d C+r+Pv RKRCe HKGmR+ Csa12g025890.1 261 ICGVILPDMVRCRRPPVLRRKRCEDHKGMRV 291 8*****************************7 PP
3	HRT-like	32.1	2e-10	330	358	1	29
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGm 29 +C +++++G +C+r + kg KRC++HK++ Csa12g025890.1 330 VCEATTNNGLPCTRRAPKGSKRCWQHKDK 358 6**************************86 PP
4	HRT-like	64	2.1e-20	378	408	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l +GsvC++ PvkgRKRCeeHKGmRi Csa12g025890.1 378 ICGVKLYNGSVCEKAPVKGRKRCEEHKGMRI 408 8*****************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MFKRDDYIRT NHDAVFPKWQ GFARSMLLRK PISETAELRK TYPDYSLISR DLGPKILIGD 60 NKENFRKGKD CVGRYRVQEA LPGLSELGVS VINHDQGRKN DGLLATLGQA ESIKYRLRSY 120 GRSITHHDLL KKLGDTPRES GLSQTQKKAG NKTEENKHDS AEERDISSDA AEKESNLQLS 180 PSRPQPVSDR HSHDDLADGS NSASVCGLLL EDGTTCNTTP IKGRKRCTEH KGKKLSRVSP 240 VKLIPSEVPT RRECQETDDD ICGVILPDMV RCRRPPVLRR KRCEDHKGMR VNAFFFLLTP 300 TERDEAVKED KSKLKTCTGL IQEGSGLNLV CEATTNNGLP CTRRAPKGSK RCWQHKDKTV 360 DHGSSSENVQ SATTRQLICG VKLYNGSVCE KAPVKGRKRC EEHKGMRIAS *

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MFKRDDYIRT NHDAVFPKWQ GFARSMLLRK PISETAELRK TYPDYSLISR DLGPKILIGD  60
NKENFRKGKD CVGRYRVQEA LPGLSELGVS VINHDQGRKN DGLLATLGQA ESIKYRLRSY  120
GRSITHHDLL KKLGDTPRES GLSQTQKKAG NKTEENKHDS AEERDISSDA AEKESNLQLS  180
PSRPQPVSDR HSHDDLADGS NSASVCGLLL EDGTTCNTTP IKGRKRCTEH KGKKLSRVSP  240
VKLIPSEVPT RRECQETDDD ICGVILPDMV RCRRPPVLRR KRCEDHKGMR VNAFFFLLTP  300
TERDEAVKED KSKLKTCTGL IQEGSGLNLV CEATTNNGLP CTRRAPKGSK RCWQHKDKTV  360
DHGSSSENVQ SATTRQLICG VKLYNGSVCE KAPVKGRKRC EEHKGMRIAS *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that negatively modulates gibberellin-mediated developmental processes. May act as transcriptional repressor of giberellin controlled genes. Binds DNA without sequence preference. {ECO:0000269\|PubMed:16244914}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa12g025890.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010448316.1	0.0	PREDICTED: protein EFFECTOR OF TRANSCRIPTION 1-like
Swissprot	A2RQG7	1e-160	ET_BRANA; Protein EFFECTOR OF TRANSCRIPTION
TrEMBL	R0GZV0	0.0	R0GZV0_9BRAS; Uncharacterized protein
STRING	XP_010448316.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2954	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26170.1	1e-146