PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g022720.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 340aa    MW: 38293.5 Da    PI: 4.5209
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g022720.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-20117167155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++y+GVr+++ +g+W+AeIrdp +   r+r++lg+f taeeAa  +++a+ kl+g
  Csa12g022720.1 117 KKYRGVRQRP-WGKWAAEIRDPEQ---RRRIWLGTFSTAEEAAIVYDNAAIKLRG 167
                     59********.**********743...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.02E-34117176No hitNo description
SuperFamilySSF541717.85E-22118175IPR016177DNA-binding domain
PfamPF008478.5E-13118167IPR001471AP2/ERF domain
PROSITE profilePS5103223.709118175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-30118175IPR001471AP2/ERF domain
SMARTSM003804.2E-39118181IPR001471AP2/ERF domain
PRINTSPR003671.3E-10119130IPR001471AP2/ERF domain
PRINTSPR003671.3E-10141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MMDEYMDFRP VKYTEHKTVI RKYTKKSSTE KKMSGGASSS RLVRVCLIDR DATDSSSDDE  60
EFLFPRRRVK RLINEIRVEP SSSSSSSASG DVSASKTKDR KRLPVDPPPP PPVQTQKKYR  120
GVRQRPWGKW AAEIRDPEQR RRIWLGTFST AEEAAIVYDN AAIKLRGPAA LTNFAVPPPE  180
PEPEPEPESN ISVSTSESMD DSQHLSSPTS VLNYQTYVSE DALNDHVIKP VKQEFLEPEQ  240
EPISWHLGQG NNNINTDNDS FPLDIPFLDN YFNESLPDIS IFDQPMSPIH QSSENDIFND  300
LVLFDSNYNT GENCSSDIKE IGSMFNDLDD SLISDLLLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-22117174159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g022720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545900.0AC254590.1 Capsella rubella clone CAP23-M18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010448056.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
SwissprotQ9SUE30.0CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A178V2V50.0A0A178V2V5_ARATH; CRF4
STRINGXP_010448056.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-161cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]