PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g020600.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 1264aa    MW: 137375 Da    PI: 7.623
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g020600.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.6e-11507553354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++hn +Er+RR++iN++++ L+el+P +     +K + a++Le +++++k+L
  Csa12g020600.1 507 EMHNLAERKRREKINEKMNALQELIPGS-----RKSDRASMLEDVIQFVKKL 553
                     58************************98.....8**************9998 PP
2HLH352.6e-1110401086354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH    3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54  
                      ++hn +Er+RR++iN++++ L+el+P +     +K + a++Le +++++k+L
  Csa12g020600.1 1040 EMHNLAERKRREKINEKMNALQELIPGS-----RKSDRASMLEDVIQFVKKL 1086
                      58************************98.....8**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR012176.3E-145571No hitNo description
PRINTSPR012176.3E-147289No hitNo description
PRINTSPR012176.3E-1490115No hitNo description
CDDcd000834.59E-13497558No hitNo description
PROSITE profilePS5088816.59504553IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-14507573IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-9507553IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-15508565IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-14510559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.59E-1310301091No hitNo description
PROSITE profilePS5088816.5910371086IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-1410401106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-910401086IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-1510411098IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-1410431092IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1264 aa     Download sequence    Send to blast
MMISSHILLI LLFPPLLDQT NPIHHVCLRF RGEDDLVELL WKSGQVVQRS HTQRPSSPPP  60
PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP  120
PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP  180
PPPPPPPPPP PPPPPPPPRP CPPTILRGSG SGGGGGGEEN VSLQLPQPEP QPYMHHQNLF  240
IQEDEMASWL YHSYHQDYFC SELLYPGVAS THATHPQSSV SLAPSPSAPY ILPPERPIGH  300
NLPVTRVENL MNFSWLRRNI YTSGRVEVGQ SIPVQVGSSA TTSSSVTLPQ TLASLAQPAP  360
SAQYILTENR PTGQVSTNFS RLRGNMFTGG RVEAGPSMEV GSSATPSSSA IESCVLPATE  420
GTGSRVSHTF AVPGLDRNGK AVAIETARTP TSGVCKAETE PIQVQPATEM GIAEDRKRKE  480
REETVAGFQG TEEARVSKSR KRSRAAEMHN LAERKRREKI NEKMNALQEL IPGSRKSDRA  540
SMLEDVIQFV KKLNSQVQDY ICLHDMTEIL ISESMLLCQM ISTVQSTMPP MMNAGNMQQF  600
MPQMGMGMMG MNQPPFMPSP KPPHIADPPY PAPHHPFPNI QTSVPSTVHL PTPQPNVVPN  660
QPQFPAYMNP YSQFLGSHQM QQLPPPPSQS QTTSQPSVSQ ASTNKELEDQ GNQPTGCKVG  720
QEKRDVCALH PNLELPIKTI MTIHRKGAKR GWCEKKSVCF LREVNIYMYM LXLFIQEDEM  780
ASWLYHSYSQ DYICSELLYH GVASTSATHP QSSVSLAPSS TAPYTLPPER PTGQTLAVTR  840
AENLMNFSWL RRNIYSMEVG QSIPAVRDSM QVGSTATTSS SFTFPQSLAS LAQLPPSIQY  900
ILTAERPPGQ VSTNFSRLGG NMFTGGRVEA RPSMEVGSSA TPSSSAIESC VLPPTESPVS  960
RTFAVPVVDP KGKAVAIETA RTPSSEVCKV ETEPIQVQPA TQMGITEDKK RKEREETVAG  1020
IQGTEEARVS KSRKRSRAAE MHNLAERKRR EKINEKMNAL QELIPGSRKS DRASMLEDVI  1080
QFVKKLNSQV QDYICLHDMT EILISESMLL CQMISTVQST MPPMMNAGNM QQFMPQMGMG  1140
MMGMNQPPFM PSPKPPHIAD PPYPAPHHPF PNIQTSVPST VHLPTPQPNV VPNQPQFPAY  1200
MNPYSQFLGS HQMQQLPPPP SQSQTTSQPS VSQASTNKEL EDQGNQPTVV ELKTICSPRK  1260
SQF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
110321049RKRSRAAEMHNLAERKRR
210451050ERKRRE
310461051RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g020600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5775865e-48AJ577586.1 Arabidopsis thaliana mRNA for putative bHLH127 transcription factor (bHLH127 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019089038.10.0PREDICTED: transcription factor bHLH119-like
SwissprotQ8GT731e-108BH119_ARATH; Transcription factor bHLH119
TrEMBLD7MD820.0D7MD82_ARALL; Uncharacterized protein
STRINGXP_010451145.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM90411635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28790.23e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]