PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G28790.2 | ||||||||
Common Name | BHLH23, EN107, F16A16.100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 340aa MW: 37635.4 Da PI: 8.1018 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.3 | 2.8e-13 | 281 | 327 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ ErrRR++iN+ + L+ellP + +K + +++L ++eY+ksLq AT4G28790.2 281 MHKLSERRRRQKINEMMKALQELLPRC-----TKTDRSSMLDDVIEYVKSLQ 327 699***********************9.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.09E-15 | 274 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.279 | 277 | 326 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.0E-11 | 281 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.91E-13 | 282 | 331 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.8E-16 | 282 | 331 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-15 | 283 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MTWKPKMLIL SHDLISPEKY IMGEDDIVEL LGKSSQVVTS SQTQTPSCDP PLILRGSGSG 60 DGEGNGPLPQ PPPPLYHQQS LFIQEDEMAS WLHQPNRQDY LYSQLLYSGV ASTHPQSLAS 120 LEPPPPPRAQ YILAADRPTG HILAERRAEN FMNISRQRGN IFLGGVEAVP SNSTLLSSAT 180 ESIPATHGTE SRATVTGGVS RTFAVPGLGP RGKAVAIETA GTQSWGLCKA ETEPVQRQPA 240 TETDITDERK RKTREETNVE NQGTEEARDS TSSKRSRAAI MHKLSERRRR QKINEMMKAL 300 QELLPRCTKT DRSSMLDDVI EYVKSLQSQI QGKHLRIFRS |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT4G28790 | |||||
AtGenExpress | AT4G28790 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G28790.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G28790 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493705 | 0.0 | AB493705.1 Arabidopsis thaliana At4g28790 mRNA for hypothetical protein, partial cds, clone: RAAt4g28790. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_974634.1 | 0.0 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Swissprot | Q9SVU6 | 0.0 | BH023_ARATH; Transcription factor bHLH23 | ||||
TrEMBL | C0SVK2 | 0.0 | C0SVK2_ARATH; Uncharacterized protein At4g28790 (Fragment) | ||||
STRING | AT4G28790.1 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT4G28790.2 |
Entrez Gene | 829000 |
iHOP | AT4G28790 |
wikigenes | AT4G28790 |
Publications ? help Back to Top | |||
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