PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g016010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 188aa    MW: 21129.9 Da    PI: 6.1234
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g016010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-192676256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                    +ykGVr +  +g+Wv+eIr+p+    + kr++lg+++ +e+Aa+a++aa  +++ge
  Csa12g016010.1 26 CYKGVRKRA-WGKWVSEIRVPK----TgKRIWLGSYDEPEKAARAYDAALFCIKGE 76
                    8*****887.**********95....35************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.81E-202684IPR016177DNA-binding domain
PfamPF008475.3E-122676IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-272684IPR001471AP2/ERF domain
PROSITE profilePS5103221.5492683IPR001471AP2/ERF domain
SMARTSM003805.8E-342689IPR001471AP2/ERF domain
PRINTSPR003679.8E-92738IPR001471AP2/ERF domain
CDDcd000182.50E-312785No hitNo description
PRINTSPR003679.8E-94965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MPSSPPKAPF LRSSPKESHE DQRFKCYKGV RKRAWGKWVS EIRVPKTGKR IWLGSYDEPE  60
KAARAYDAAL FCIKGEKGVF NFPTDKKPQL PEGYVRPLSK HDIQTISTNY AYSVVHVPSH  120
ATTLTVTSQV PSEVSVSPDV SASIEITEVV DEYYLPTDAN AESMFSVEDL QLDNFLMMDI  180
DWINNLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1527851574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g016010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937120.0AB493712.1 Arabidopsis thaliana At4g31060 mRNA for hypothetical protein, partial cds, clone: RAAt4g31060.
GenBankAL0221980.0AL022198.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F6I18 (ESSA project).
GenBankAL1615780.0AL161578.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 74.
GenBankAY5608840.0AY560884.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At4g31060) mRNA, complete cds.
GenBankBT0117740.0BT011774.1 Arabidopsis thaliana At4g31060 mRNA, complete cds.
GenBankBT0123990.0BT012399.1 Arabidopsis thaliana At4g31060 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010451100.11e-138PREDICTED: ethylene-responsive transcription factor ERF015-like
SwissprotQ6NLD51e-116ERF15_ARATH; Ethylene-responsive transcription factor ERF015
TrEMBLR0GZQ71e-124R0GZQ7_9BRAS; Uncharacterized protein
STRINGXP_010451100.11e-138(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148991620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.11e-108ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]