PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g014390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 425aa MW: 47989 Da PI: 9.33 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.5 | 7.9e-16 | 24 | 100 | 14 | 97 |
T-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 14 grlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + l++p kf++ + g +e+kt l++ s sW+v++ ++++ lt GWkeF+ a++L++gD++vF++dg s f +v+ f Csa12g014390.1 24 SYLTIPVKFFSVYleGR--NEGKTAELRSdASEISWKVEM--EGQR----LTVGWKEFATAHDLRVGDVIVFRHDGASVF--HVTCF 100 459*******9998544..46678888876889*******..8877....************************999999..88776 PP | |||||||
2 | B3 | 64.8 | 1.3e-20 | 178 | 273 | 2 | 94 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f +l++ ++ +++ + lpk+f ++ ++ k +s +++l+de ++W++ l++r++sg++++++GW++F+++++Lk gD+v+Fkl++++ +++ Csa12g014390.1 178 FVALVSDSNIRRDTMFLPKRFYDSGSLTK-GSNQIVLMDEGMvegvKTWTLFLKFRNSSGTFYMRGGWRSFCHEKELKPGDTVTFKLESKNMKRP 271 5678899999************7777665.6779*****9999********************************************98755546 PP EE CS B3 93 vv 94 ++ Csa12g014390.1 272 LL 273 55 PP | |||||||
3 | B3 | 62.6 | 6.3e-20 | 315 | 413 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 f++ + +++ lk+g l+lp kf++ +g+++ e k++tl d++g++W v+l ++k+ ++ l+ G keF kang+k+++++vF+l+++ +++ + + Csa12g014390.1 315 FVTLTPTPYGLKNGKLRLPVKFIKVNGMENLERKKMTLLDKHGKKWPVNLVMEKGNTQTRLGLGLKEFFKANGIKANESLVFELVWEdKTTLPIL 409 566677899*****************9999999****************************************************9977777777 PP EEE- CS B3 95 kvfr 98 ++++ Csa12g014390.1 410 QLCS 413 7776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.6E-22 | 9 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-21 | 9 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.337 | 11 | 103 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.62E-16 | 12 | 100 | No hit | No description |
SMART | SM01019 | 1.9E-21 | 14 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.2E-11 | 25 | 97 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.2E-18 | 169 | 272 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.71E-18 | 173 | 274 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.52E-19 | 175 | 269 | No hit | No description |
PROSITE profile | PS50863 | 14.917 | 177 | 278 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-18 | 178 | 272 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.5E-18 | 178 | 279 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.1E-17 | 313 | 409 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.943 | 315 | 414 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-19 | 315 | 414 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.8E-23 | 315 | 415 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.16E-17 | 315 | 409 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.07E-17 | 315 | 402 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MADPVLQPPT NPHFFQPLLP GFDSYLTIPV KFFSVYLEGR NEGKTAELRS DASEISWKVE 60 MEGQRLTVGW KEFATAHDLR VGDVIVFRHD GASVFHVTCF GPSCCEIQHV QSCDDNDDDD 120 DEQENIRNLS MKQSLKTEPE SSLDEDKDYM GKLPRKKHVK KRIPEAKAKS FSSDPSCFVA 180 LVSDSNIRRD TMFLPKRFYD SGSLTKGSNQ IVLMDEGMVE GVKTWTLFLK FRNSSGTFYM 240 RGGWRSFCHE KELKPGDTVT FKLESKNMKR PLLRFSTAEL KRVSTKDCNK GKRNKSGDSS 300 EKVPSSPSSV SEGRFVTLTP TPYGLKNGKL RLPVKFIKVN GMENLERKKM TLLDKHGKKW 360 PVNLVMEKGN TQTRLGLGLK EFFKANGIKA NESLVFELVW EDKTTLPILQ LCSNTKTCPV 420 IVNS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g014390.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010447527.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein REM7-like | ||||
Swissprot | Q8H2D0 | 1e-127 | REM7_ARATH; B3 domain-containing protein REM7 | ||||
TrEMBL | A0A178UT08 | 1e-180 | A0A178UT08_ARATH; Uncharacterized protein | ||||
STRING | Cagra.3807s0035.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31660.1 | 1e-128 | B3 family protein |
Publications ? help Back to Top | |||
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