PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g014090.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARR-B
Protein Properties Length: 528aa    MW: 59226.5 Da    PI: 6.5423
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g014090.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.72e-26187240155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr+ Wt+eLH++F+ av++L G ekA+Pk+il+lm+v+ Lt+e+v+SHLQk+R+
  Csa12g014090.1 187 KPRVLWTHELHNKFLAAVDHL-GVEKAVPKKILDLMNVDKLTRENVASHLQKFRV 240
                     79*******************.********************************7 PP
2Response_reg84.23.9e-28211291109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+++ +++l+++l + +y +v+ + +++ alell+e++  +Dl++ D++mp+mdG++ll+     e++lp+i+++ah++++++ + +k G
  Csa12g014090.1  21 VLAVDDDQTCLRILQTLLHHCQY-HVTITNQAQTALELLRENKnkFDLVISDVDMPDMDGFKLLELVGL-EMDLPVIMLSAHSDPKYVMKGVKHG 113
                     799********************.***************888888*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +eel +
  Csa12g014090.1 114 ACDYLLKPVRIEELKN 129
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363926.6E-1601527IPR017053Response regulator B-type, plant
SuperFamilySSF521725.27E-3618143IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.5E-4318172No hitNo description
SMARTSM004482.8E-3319131IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.87720135IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.2E-2521129IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.34E-2822134No hitNo description
Gene3DG3DSA:1.10.10.603.0E-27184244IPR009057Homeodomain-like
PROSITE profilePS5129413.71184243IPR017930Myb domain
SuperFamilySSF466895.02E-19185244IPR009057Homeodomain-like
TIGRFAMsTIGR015578.3E-25187240IPR006447Myb domain, plants
PfamPF002491.3E-5191238IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MTMSIEQEIE VLDQFPIGMR VLAVDDDQTC LRILQTLLHH CQYHVTITNQ AQTALELLRE  60
NKNKFDLVIS DVDMPDMDGF KLLELVGLEM DLPVIMLSAH SDPKYVMKGV KHGACDYLLK  120
PVRIEELKNI WQHVVRKSKL KKNKSSVSNG AGNSDKANNN RKRKEQYEEE EEEERGNEND  180
DPTAQKKPRV LWTHELHNKF LAAVDHLGVE KAVPKKILDL MNVDKLTREN VASHLQKFRV  240
ALKKVSDEAN QQANRVAIDS HLMQMNSHKG LGGFYHHRAI PVGSSQFHGG ATMMRHYPSN  300
RNLGRVNSLA GGMFQPVTSS FPRNHNDGGN ILQGLPLPPL EELQINKAFQ SFNSQQNSLM  360
VAPNNHLLLE GHPQSSSPSL NQGFSPHFET NNNNKQREHW SNTVLSTNMP QSNVHSKPDT  420
LEWTAFCDSA NPLINPNLDT SSTSFCRNTD FGSSNAAQTD LFHPLQMNQQ HASNWGSMTE  480
AQLFRNCDSK EGLHMASDAG SLDDIVNSLM TQEQSPTDFS EGGWVMV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-35183246164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. {ECO:0000269|PubMed:11574878}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g014090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010447471.20.0PREDICTED: two-component response regulator ARR10
SwissprotO493970.0ARR10_ARATH; Two-component response regulator ARR10
TrEMBLR0GVR20.0R0GVR2_9BRAS; Two-component response regulator
STRINGXP_010447471.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19812879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.10.0response regulator 10
Publications ? help Back to Top
  1. Hill K,Schaller GE
    Enhancing plant regeneration in tissue culture: a molecular approach through manipulation of cytokinin sensitivity.
    Plant Signal Behav, 2013. 8(10): p. doi: 10.4161/psb.25709
    [PMID:23887495]
  2. Ramireddy E,Chang L,Schmülling T
    Cytokinin as a mediator for regulating root system architecture in response to environmental cues.
    Plant Signal Behav, 2014. 9(1): p. e27771
    [PMID:24509549]
  3. Choi SH, et al.
    Gene duplication of type-B ARR transcription factors systematically extends transcriptional regulatory structures in Arabidopsis.
    Sci Rep, 2014. 4: p. 7197
    [PMID:25425016]
  4. Cortleven A, et al.
    Cytokinin Regulates the Etioplast-Chloroplast Transition through the Two-Component Signaling System and Activation of Chloroplast-Related Genes.
    Plant Physiol., 2016. 172(1): p. 464-78
    [PMID:27388681]
  5. Street IH, et al.
    Cytokinin acts through the auxin influx carrier AUX1 to regulate cell elongation in the root.
    Development, 2016. 143(21): p. 3982-3993
    [PMID:27697901]
  6. Wang Y,Wu Y,Yu B,Yin Z,Xia Y
    EXTRA-LARGE G PROTEINs Interact with E3 Ligases PUB4 and PUB2 and Function in Cytokinin and Developmental Processes.
    Plant Physiol., 2017. 173(2): p. 1235-1246
    [PMID:27986866]
  7. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  8. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  9. Zubo YO, et al.
    Cytokinin induces genome-wide binding of the type-B response regulator ARR10 to regulate growth and development in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(29): p. E5995-E6004
    [PMID:28673986]
  10. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  11. Rong XF, et al.
    Type-B ARRs Control Carpel Regeneration Through Mediating AGAMOUS Expression in Arabidopsis.
    Plant Cell Physiol., 2018. 59(4): p. 756-764
    [PMID:29186581]
  12. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]