PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g013980.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TALE
Protein Properties Length: 389aa    MW: 43919.1 Da    PI: 6.4193
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g013980.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78.5e-083323652154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp++e++++L +++gL+ +q+ +WF N+R +
  Csa12g013980.1 332 KWPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 365
                     569*****************************87 PP
2ELK26.81.2e-09286307122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++++++++++++E++
  Csa12g013980.1 286 ELKHELKQGFKEKIVDIREEIM 307
                     9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.1E-19121165IPR005540KNOX1
PfamPF037903.9E-17123164IPR005540KNOX1
SMARTSM012563.0E-26172227IPR005541KNOX2
PfamPF037911.4E-19176226IPR005541KNOX2
SMARTSM011886.2E-4286307IPR005539ELK domain
PfamPF037893.0E-6286307IPR005539ELK domain
PROSITE profilePS512139.446286306IPR005539ELK domain
PROSITE profilePS5007111.985306369IPR001356Homeobox domain
SMARTSM003895.6E-10308373IPR001356Homeobox domain
SuperFamilySSF466891.75E-15308372IPR009057Homeodomain-like
CDDcd000864.70E-11309365No hitNo description
Gene3DG3DSA:1.10.10.601.0E-24313371IPR009057Homeodomain-like
PfamPF059201.7E-17326365IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009727Biological Processdetection of ethylene stimulus
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MSFNNSSHLL PPQEDLPLRH FSDQSHQPPP PQQHQRHFSE TPSLVTASFL NHPSTLATTE  60
SDLAPPHRNG DNSASDANPR WLSFHTEIQN AGEVRSEVVD GVNADGETIL GVVGGEDWRS  120
ASYKAAILRH PMYEQLLAAH VACLRVATPV DQIPRIDAQL SQLHTVAEKY STLGVVVDNK  180
ELDHFMSHYV VLLCSFKEQL QHHVCVHAME AITACWEIEQ SLQSLTGVSP SESNGKTMSD  240
DEDDNQVDSE VNMFDGSLDG SDCLMGFGPL VPTERERSLM ERVKKELKHE LKQGFKEKIV  300
DIREEIMRKR RAGKLPGDTT SVLKEWWRTH SKWPYPTEED KAKLVQETGL QLKQINNWFI  360
NQRKRNWNSN TSTSSTLSKN KRKRTDKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1362383RKRNWNSNTSTSSTLSKNKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g013980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3066610.0AF306661.1 Arabidopsis thaliana homeodomain transcription factor KNAT5 (KNAT5) mRNA, complete cds.
GenBankBT0260330.0BT026033.1 Arabidopsis thaliana At4g32040 mRNA, complete cds.
GenBankD439620.0D43962.1 Arabidopsis thaliana mRNA for homeodomein containing protein 1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010447446.10.0PREDICTED: homeobox protein knotted-1-like 5
SwissprotP480020.0KNAT5_ARATH; Homeobox protein knotted-1-like 5
TrEMBLA0A178V1Z30.0A0A178V1Z3_ARATH; KNAT5
STRINGXP_010447446.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32040.10.0KNOTTED1-like homeobox gene 5