PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g012980.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 305aa    MW: 33991.7 Da    PI: 4.7111
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g012980.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.51.6e-17202236135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Csa12g012980.1 202 CLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRL 236
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.0E-1061292IPR016679Transcription factor, GATA, plant
SuperFamilySSF577162.61E-15195258No hitNo description
PROSITE profilePS5011412.044196232IPR000679Zinc finger, GATA-type
SMARTSM004016.7E-17196246IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.2E-14199234IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.01E-14201248No hitNo description
PROSITE patternPS003440202227IPR000679Zinc finger, GATA-type
PfamPF003202.6E-15202236IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MERLASELFL VAGNPDSFVV DDLLDFSNDD GQTDDGFDTL LPDSSSSVST VTLTDSSNSP  60
SSVFTDSTAF SHDLYIPSED LAELEWLSNI VEETFSEEDQ DKLHLLSGLK NPQTIGSTQT  120
HLIKPEPEPD FDQFIDTDES NVAVPAKARS KRSRSAASTW ASRLLSLADS DESNPKKKQR  180
RVNEQQDMAV EMDVDCGGGR RCLHCATEKT PQWRTGPMGP KTLCNACGVR YKSGRLVPEY  240
RPASSPTFVM ARHSNSHRKV MELRRQKEMR DEHMLSQLRC ENLMMDIRSN GEDFLIHNHV  300
ASGF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174180PKKKQRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g012980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010447323.10.0PREDICTED: GATA transcription factor 9-like
SwissprotO826320.0GATA9_ARATH; GATA transcription factor 9
TrEMBLR0H0E90.0R0H0E9_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010447323.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56822749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-156GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]