PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g008220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C2H2 | ||||||||
Protein Properties | Length: 286aa MW: 31684.6 Da PI: 9.0295 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.7 | 0.0017 | 161 | 183 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F ++ L H +H Csa12g008220.1 161 FECGGCKKVFGSHQALGGHRASH 183 89************999999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.037 | 74 | 96 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.411 | 74 | 101 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.0E-7 | 74 | 98 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.55E-7 | 75 | 96 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 76 | 96 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.55E-7 | 156 | 183 | No hit | No description |
Pfam | PF13912 | 1.1E-7 | 160 | 184 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3 | 161 | 183 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.66 | 161 | 188 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 163 | 183 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.68E-5 | 220 | 246 | No hit | No description |
Pfam | PF13912 | 5.4E-11 | 220 | 245 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.494 | 221 | 248 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.11 | 221 | 243 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 223 | 243 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MTNYNSYYDP TFRIPLHPSN ARNPNPNLQF ALSPSYDHSP KKKRTKTIAS SSSSSPKKPR 60 YTKNPDPNAP KITRPCTECG RQFWSWKALF GHMRCHPERQ WRGINPPPNY RSPTTAASSK 120 QLNQRSLDWV SFMSEEDHDV ASCLLMLSNG TPSSSSTSER FECGGCKKVF GSHQALGGHR 180 ASHKNVKGCF AITNVNDYPM TVTTSSDHDH QGKIVVFSGH HKCNICFRVF SSGQALGGHM 240 RCHWEREEEP IIGVGGALDL NVPATMQDLS TSDTVGCSLD LRLSL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g008220.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493719 | 0.0 | AB493719.1 Arabidopsis thaliana At4g35280 mRNA for hypothetical protein, partial cds, clone: RAAt4g35280. | |||
GenBank | AL022604 | 0.0 | AL022604.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E12 (ESSA project). | |||
GenBank | AL161587 | 0.0 | AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | DQ446896 | 0.0 | DQ446896.1 Arabidopsis thaliana clone pENTR221-At4g35280 zinc finger family protein (At4g35280) mRNA, complete cds. | |||
GenBank | DQ653246 | 0.0 | DQ653246.1 Arabidopsis thaliana clone 0000012370_0000008938 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010451043.1 | 0.0 | PREDICTED: zinc finger protein ZAT3-like | ||||
Swissprot | O65499 | 1e-169 | ZAT3_ARATH; Zinc finger protein ZAT3 | ||||
TrEMBL | A0A178UTT4 | 1e-167 | A0A178UTT4_ARATH; DAZ2 | ||||
STRING | XP_010451043.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4619 | 18 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 1e-161 | C2H2-like zinc finger protein |