PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g007970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 497aa MW: 55758.8 Da PI: 4.8477 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.1 | 4.1e-54 | 9 | 135 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lp GfrF+Ptdeelv++yL+ k++g++ ++ +vi+++d++k+ePwdLp+ +k+++ ew+fF++rd+ky++g+r+nrat+sgyWkatgkd++++ Csa12g007970.1 9 LPLGFRFRPTDEELVNHYLRLKINGRHSDV-RVIPDIDVCKWEPWDLPAlsVIKTDDPEWFFFCPRDRKYPNGHRSNRATDSGYWKATGKDRSIK 102 699************************999.99***************4447888889************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyr 127 s k++l+g+kktLvfy+grapkge+t+W+mheyr Csa12g007970.1 103 S-KKTLIGMKKTLVFYRGRAPKGERTNWIMHEYR 135 *.999****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-63 | 4 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.73 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-28 | 10 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0071470 | Biological Process | cellular response to osmotic stress | ||||
GO:1900426 | Biological Process | positive regulation of defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 497 aa Download sequence Send to blast |
MGAVSMESLP LGFRFRPTDE ELVNHYLRLK INGRHSDVRV IPDIDVCKWE PWDLPALSVI 60 KTDDPEWFFF CPRDRKYPNG HRSNRATDSG YWKATGKDRS IKSKKTLIGM KKTLVFYRGR 120 APKGERTNWI MHEYRPTLKD LDGTGPGQNP FVLCRLFHKP DDRVNGVKSD EPAPTSCKDS 180 PDDTSSDLVQ ETPSSDAAVE KPSDYSGGCG YAQSNMADGS MTEVGKENLW LSCDLEDQRA 240 PAPRVDSTYA GDFGYDEIGF QFQDGTSEPD VSLTELLEEV FNNPDDFSCE ESVSRENPNG 300 IFSSDKMLQS AAPEDVYFND FMAYTDTDAE MVQLQYGLDN GASGWPRDAV SAYPATTNSY 360 YGDLLQPDQV INHTTENNLT EGRGIKIRGR QPQNRSSTGL INQGIAPRRI RLQVHSSSVP 420 PDDKNQSEEK QREEVNEGLT DIPEDKQVAA KDTEKSDSLV KPQIKLRTRG TIGQVKADRV 480 VDDEVKKKKR TCFRHE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-45 | 4 | 159 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-45 | 4 | 159 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-45 | 4 | 159 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-45 | 4 | 159 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-45 | 4 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 5e-45 | 4 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 5e-45 | 4 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 5e-45 | 4 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 5e-45 | 4 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 5e-45 | 4 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 5e-45 | 4 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 5e-45 | 4 | 159 | 15 | 168 | NAC domain-containing protein 19 |
4dul_A | 5e-45 | 4 | 159 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 5e-45 | 4 | 159 | 12 | 165 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00108 | PBM | Transfer from AT4G35580 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g007970.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL031135 | 1e-153 | AL031135.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F8D20 (ESSAII project). | |||
GenBank | AL161587 | 1e-153 | AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83. | |||
GenBank | CP002687 | 1e-153 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010446907.1 | 0.0 | PREDICTED: protein NTM1-like 9 | ||||
Swissprot | F4JN35 | 0.0 | NTL9_ARATH; Protein NTM1-like 9 | ||||
TrEMBL | R0H2V4 | 0.0 | R0H2V4_9BRAS; Uncharacterized protein | ||||
STRING | XP_010446907.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5594 | 28 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.2 | 0.0 | NAC transcription factor-like 9 |
Publications ? help Back to Top | |||
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