PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g004690.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family BES1
Protein Properties Length: 329aa    MW: 35150.2 Da    PI: 8.6128
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g004690.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822218.12e-67171621145
          DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssas.aspess 93 
                     g+sgr+ptwkErEnnk+RERrRRai+akiy+GLRaqGnyklpk++DnneVlkALc eAGw+vedDGttyrkg+kp+  ++++ g+  +  s++ss
  Csa12g004690.1  17 GSSGRTPTWKERENNKKRERRRRAITAKIYSGLRAQGNYKLPKHCDNNEVLKALCLEAGWIVEDDGTTYRKGFKPPpAASDMSGTTPTnFSTNSS 111
                     689*************************************************************************87777777665538999** PP

          DUF822  94 lqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlsl 145
                     +q s++ssa++sp++sy+ sp sssfpsps++d+++ + +  llp+l++ ++
  Csa12g004690.1 112 IQPSPQSSAFPSPAPSYHGSPVSSSFPSPSRYDTTNPS-SYLLLPFLHNIAS 162
                     **********************************9876.6889999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056877.5E-6318146IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAAGGIGGVG EGGGGGGSSG RTPTWKEREN NKKRERRRRA ITAKIYSGLR AQGNYKLPKH  60
CDNNEVLKAL CLEAGWIVED DGTTYRKGFK PPPAASDMSG TTPTNFSTNS SIQPSPQSSA  120
FPSPAPSYHG SPVSSSFPSP SRYDTTNPSS YLLLPFLHNI ASSIPANLPP LRISNSAPVT  180
PPLSSPTSRG SKRKLTSEQL LLPNGGGGSL HGLRHPLFAI SAPSSPTRRA GHQTPPTIPE  240
CDESEEDSIE DSGRWINFQS TAPTSPTFNL VKQTSMVIDM KRSDWGMNGR GSEFEFENGT  300
VKPWEGEMIH EVGVEDLELT LGGTKTRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A2e-2521102372451Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B2e-2521102372451Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C2e-2521102372451Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D2e-2521102372451Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g004690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0503940.0AY050394.1 Arabidopsis thaliana AT4g36780/C7A10_580 mRNA, complete cds.
GenBankAY0973570.0AY097357.1 Arabidopsis thaliana AT4g36780/C7A10_580 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284125.11e-179BES1/BZR1 homolog protein 2
SwissprotQ94A431e-177BEH2_ARATH; BES1/BZR1 homolog protein 2
TrEMBLR0H0R81e-178R0H0R8_9BRAS; Uncharacterized protein
STRINGXP_010446744.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115122333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36780.13e-86BES1/BZR1 homolog 2