PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa12g003270.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 1740aa MW: 198147 Da PI: 5.6023

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa12g003270.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.8	1.1e-09	1100	1145	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+ +ErrRR riN f++Lr++lP+++ +Ka++L ++v+Y ++L Csa12g003270.1 1100 KKHSDAERRRRLRINCQFATLRTILPNLV------KDKASVLGETVRYFNEL 1145 68***********************83......58999******9887 PP
2	HLH	36.2	1.1e-11	1586	1632	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+ +ErrRR riN f++Lr++lP++ K +Ka++L ++v+Y ++L Csa12g003270.1 1586 KKHSDAERRRRLRINCQFATLRTILPNL-----VKQDKASVLGETVRYFNEL 1632 68***********************9.....7************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.36E-10	1088	1151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.734	1097	1145	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.3E-11	1100	1150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.83E-6	1100	1150	No hit	No description
Pfam	PF00010	2.2E-7	1100	1145	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.4E-10	1103	1151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.24E-12	1574	1638	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.008	1583	1632	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.3E-12	1586	1637	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-9	1586	1632	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.01E-7	1586	1637	No hit	No description
SMART	SM00353	4.6E-12	1589	1638	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1740 aa Download sequence Send to blast
MEKKVFEELD ELKAENVKLR IECRNKTELL ENLNKLQKEQ LAEIREARLV NEKQCFEIEE 60 KTRLVSELKR ANEDLQRCLI EKDSVLKLVN VANDKLRANG EDKYREFEEE KRSMLSALDE 120 ANEKNIDLEQ RNNVYRAEIE GLKGLLGVAE KKRIQVEKTL EAMKETRGRD DVVVKVEEEK 180 TQVEEKLKWK KEQFKHLEEA YEKLQNLFRD SKKEWEVDRS TLLEDIYSLQ TKLDSLTRIS 240 EDLQKKLQMC NSALTQEETR RKHLEIQVSE FKTRYEDAFA EYQDARTQLD HLAGKRDEEV 300 AELRQSLSIK ETYLKEMKYE NRKLEQENHE LLGSLKELQE ATIQGSGNSA LSKLKNKFRN 360 LENIHKTCSA NLRSKEAEWS SRLEKMAEDI NDYQLRLQSK EAALKDVELE LENCHSSAAK 420 MRLQYEEISV MYLVLSRTVS EAQSRLANVE DEQIKDEKRE EKSYSLLMEQ LDQKNAALAK 480 AHLEIEEERE RVACLLKRID MLDLLEDQNV QMEKEVESYK EMVEESSRFQ TQMKQKLKEA 540 ENDYEEKLLQ VCDALDNTNS DLVAEREKVV ALTRQIESFG FVKEKNLVLE KEIQKYKEML 600 EESHKCRVLL EEQISQLESD SKENIRELCS KVDIAYAKLA EEVEKTASLV KKSEAIGLNE 660 EHRQQELDNY KERLEESTKS QLLLQEKVVE VENDSKRKLA DVSEALETAN SELSDKTSEV 720 YQIEFQLWIW KSIAKRLKAE LEQNQNLRKR VEASLLEQVG VGEAIMQERN ELMHKLKAIS 780 SARSSDSEIE TLMRDKDDML ENLQREVELL EQESLRRELE DVVIAHIVTE RELQKEREIF 840 AGALQQKDQD LREVKHILEG SFKSVSLLLE EEQNEVNMLH KAWEKLAATQ ILTAVETESK 900 KMMIIELEGE IFSLSQKLKT SGEYASCFGQ EATKLGAELK TKQRELEEVT TKMQAKLKTS 960 EAEKTELLKE VASLSSEKGN ILSFISEVED GMLKLCDGDT KLMKALERVT QCCDEFGKEN 1020 NYGETIGSPR LAMKHDDALE QGMMPPIARC YKPTAYSTTM GRNVFFAGAA AATSSKLFSR 1080 GFSATTKPKS KTESKEAAAK KHSDAERRRR LRINCQFATL RTILPNLVKD KASVLGETVR 1140 YFNELKKMVQ DIPTTPSLED SLRLGHCNNN RDLARVVFSC SDREGLMSEV AESLKAAKTK 1200 AVRAEVTVGG RTKCALFVQG VNGNEGLVKL KKSLKPVVNG LSAHRHLLQS TPATQPPALT 1260 VPPLPKTTMP PLPSLPTPGQ QTLPQPQPTL PQPTGLPPMP STQIPSLPNP VQPTIPNIPQ 1320 VELLEQESLR RELEDVVIAH IVTERELQKE REIFAGALQQ KDQDLREVKH ILEGSFKSVS 1380 LLLEEEQNEV NMLHKAWEKL AATQILTAVE TEAKKMMIIE LEGEIFSLSQ KLKTSGEYAS 1440 CFRKEATKLG AELETKQREL EEVTTQMQAK LKASEAEKTE LVEEVASLSS EKRNLLSFIS 1500 EVEDGMLKLC DGDTKLMKTL ERLEQGMMPP ISRCYKPTAY STTMGRNVFF AGAGAAATTS 1560 SKLFSRGFSA TTKPKSKTES KEAAAKKHSD AERRRRLRIN CQFATLRTIL PNLVKQDKAS 1620 VLGETVRYFN ELKKMVQDIP TTPSLEDSLR LGHCNNNRDL ARVVFSCSDR EGLMSEVAES 1680 LKAAKTKAVR AEIMTVGGRT KCALFVQGVN GNEGLVKLKK SLKPVVNGKS SSEAKKQQQ*

Sequence ? help Back to Top

Protein Sequence Length: 1740 aa Download sequence Send to blast

MEKKVFEELD ELKAENVKLR IECRNKTELL ENLNKLQKEQ LAEIREARLV NEKQCFEIEE  60
KTRLVSELKR ANEDLQRCLI EKDSVLKLVN VANDKLRANG EDKYREFEEE KRSMLSALDE  120
ANEKNIDLEQ RNNVYRAEIE GLKGLLGVAE KKRIQVEKTL EAMKETRGRD DVVVKVEEEK  180
TQVEEKLKWK KEQFKHLEEA YEKLQNLFRD SKKEWEVDRS TLLEDIYSLQ TKLDSLTRIS  240
EDLQKKLQMC NSALTQEETR RKHLEIQVSE FKTRYEDAFA EYQDARTQLD HLAGKRDEEV  300
AELRQSLSIK ETYLKEMKYE NRKLEQENHE LLGSLKELQE ATIQGSGNSA LSKLKNKFRN  360
LENIHKTCSA NLRSKEAEWS SRLEKMAEDI NDYQLRLQSK EAALKDVELE LENCHSSAAK  420
MRLQYEEISV MYLVLSRTVS EAQSRLANVE DEQIKDEKRE EKSYSLLMEQ LDQKNAALAK  480
AHLEIEEERE RVACLLKRID MLDLLEDQNV QMEKEVESYK EMVEESSRFQ TQMKQKLKEA  540
ENDYEEKLLQ VCDALDNTNS DLVAEREKVV ALTRQIESFG FVKEKNLVLE KEIQKYKEML  600
EESHKCRVLL EEQISQLESD SKENIRELCS KVDIAYAKLA EEVEKTASLV KKSEAIGLNE  660
EHRQQELDNY KERLEESTKS QLLLQEKVVE VENDSKRKLA DVSEALETAN SELSDKTSEV  720
YQIEFQLWIW KSIAKRLKAE LEQNQNLRKR VEASLLEQVG VGEAIMQERN ELMHKLKAIS  780
SARSSDSEIE TLMRDKDDML ENLQREVELL EQESLRRELE DVVIAHIVTE RELQKEREIF  840
AGALQQKDQD LREVKHILEG SFKSVSLLLE EEQNEVNMLH KAWEKLAATQ ILTAVETESK  900
KMMIIELEGE IFSLSQKLKT SGEYASCFGQ EATKLGAELK TKQRELEEVT TKMQAKLKTS  960
EAEKTELLKE VASLSSEKGN ILSFISEVED GMLKLCDGDT KLMKALERVT QCCDEFGKEN  1020
NYGETIGSPR LAMKHDDALE QGMMPPIARC YKPTAYSTTM GRNVFFAGAA AATSSKLFSR  1080
GFSATTKPKS KTESKEAAAK KHSDAERRRR LRINCQFATL RTILPNLVKD KASVLGETVR  1140
YFNELKKMVQ DIPTTPSLED SLRLGHCNNN RDLARVVFSC SDREGLMSEV AESLKAAKTK  1200
AVRAEVTVGG RTKCALFVQG VNGNEGLVKL KKSLKPVVNG LSAHRHLLQS TPATQPPALT  1260
VPPLPKTTMP PLPSLPTPGQ QTLPQPQPTL PQPTGLPPMP STQIPSLPNP VQPTIPNIPQ  1320
VELLEQESLR RELEDVVIAH IVTERELQKE REIFAGALQQ KDQDLREVKH ILEGSFKSVS  1380
LLLEEEQNEV NMLHKAWEKL AATQILTAVE TEAKKMMIIE LEGEIFSLSQ KLKTSGEYAS  1440
CFRKEATKLG AELETKQREL EEVTTQMQAK LKASEAEKTE LVEEVASLSS EKRNLLSFIS  1500
EVEDGMLKLC DGDTKLMKTL ERLEQGMMPP ISRCYKPTAY STTMGRNVFF AGAGAAATTS  1560
SKLFSRGFSA TTKPKSKTES KEAAAKKHSD AERRRRLRIN CQFATLRTIL PNLVKQDKAS  1620
VLGETVRYFN ELKKMVQDIP TTPSLEDSLR LGHCNNNRDL ARVVFSCSDR EGLMSEVAES  1680
LKAAKTKAVR AEIMTVGGRT KCALFVQGVN GNEGLVKLKK SLKPVVNGKS SSEAKKQQQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa12g003270.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL035538	0.0	AL035538.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project).
GenBank	AL161592	0.0	AL161592.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 88.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019088851.1	0.0	PREDICTED: uncharacterized protein At4g38062-like
Swissprot	P0CB23	0.0	Y4862_ARATH; Uncharacterized protein At4g38062
TrEMBL	R0GUB7	0.0	R0GUB7_9BRAS; Uncharacterized protein
STRING	XP_010446594.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9592	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38070.1	0.0	bHLH family protein