PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g104630.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SRS
Protein Properties Length: 339aa    MW: 36296.8 Da    PI: 8.108
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g104630.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702235.87e-731172704154
          DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...aeaaskrkrelkskkqsalsstklssae 95 
                     g+ sCqdCGnqakkdC+h+RCRtCCksrg++C+thvkstWvpaakrrerqqqla++ ++ ++++    e+ +kr+re+  +++++l +t+++s++
  Csa11g104630.2 117 GGPSCQDCGNQAKKDCSHMRCRTCCKSRGLECSTHVKSTWVPAAKRRERQQQLASSGQQPQSQSqpqVESVPKRQREHFPSRSNSLVCTRIPSNN 211
                     6789**************************************************998887777667788999*********************** PP

          DUF702  96 skkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                     +++ le+ s+P+evss+a+frcvrvssvdd+eee+aY+tavsigGhvfkGiLydqG++e
  Csa11g104630.2 212 TSSGLEIGSFPPEVSSPAIFRCVRVSSVDDEEEEYAYKTAVSIGGHVFKGILYDQGPAE 270
                     ********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.5E-66118269IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016237.2E-27120162IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.4E-26221268IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAGFFSLGQG GGRGNSQDHR TNNNPSPSGT ESWLWFRNPN SNANAGGGDV VAPSSYKGTL  60
ELWQHPNNQE IIFQQQQQQR LDLYTSAAGL GVGPSNRNLM ETSDGALMMM RNGSSGGGPS  120
CQDCGNQAKK DCSHMRCRTC CKSRGLECST HVKSTWVPAA KRRERQQQLA SSGQQPQSQS  180
QPQVESVPKR QREHFPSRSN SLVCTRIPSN NTSSGLEIGS FPPEVSSPAI FRCVRVSSVD  240
DEEEEYAYKT AVSIGGHVFK GILYDQGPAE RSSSGGGSQP LNHIAAGPSA SSSSPNVSCN  300
NGVVGSTSDH YIDPASLNYP TPMNTFMTGT HFFSNPRS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g104630.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444807.10.0PREDICTED: protein SHORT INTERNODES-like
RefseqXP_010444809.10.0PREDICTED: protein SHORT INTERNODES-like
SwissprotQ9XGX00.0SHI_ARATH; Protein SHORT INTERNODES
TrEMBLR0EWR70.0R0EWR7_9BRAS; Uncharacterized protein
STRINGXP_010444807.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.11e-147Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Islam MA, et al.
    Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants.
    PLoS ONE, 2013. 8(1): p. e53377
    [PMID:23308204]
  2. Pfannebecker KC,Lange M,Rupp O,Becker A
    An Evolutionary Framework for Carpel Developmental Control Genes.
    Mol. Biol. Evol., 2017. 34(2): p. 330-348
    [PMID:28049761]
  3. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]