PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g103950.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 315aa    MW: 36542.2 Da    PI: 5.7744
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g103950.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3629.5e-2010104198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     ffkv+     ++s+ lv+p  f++   + k+ ++++ l de gr W+v+   + +++r  ++++kGW++F+k++ L+ gDf+vF++dg+s+f   
  Csa11g103950.1  10 FFKVF--LPEFSSHELVIPPAFIDLL-LGKPLPTEVFLLDEIGRLWRVETETEDTDERfcVLFKKGWESFAKDQSLEFGDFLVFRYDGDSRF--S 99 
                     88999..889999**********555.445799*****************988888888999**************************9999..8 PP

                     EEEE- CS
              B3  94 vkvfr 98 
                     v++f 
  Csa11g103950.1 100 VTIFA 104
                     88875 PP
2B338.81.6e-12213295991
                     HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE. CS
              B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefe 91 
                      +++ + l +p +f++++g++   + +l l+de+g++W +k+   ++++++ ++  W+ F+k+++L+ +  ++++++  ++ ++ e
  Csa11g103950.1 213 TSSSYQKLEIPTTFLKSNGIE--LEEELELRDEDGKKWPLKVENHGRGQKFSFA-TWSCFCKSQKLRKNHKFLLEFIvpRSgRCNE 295
                     455566789*********877..5569***************655566667777.9*************99999966333334444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.2838106IPR003340B3 DNA binding domain
SuperFamilySSF1019365.69E-209105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.5E-219106IPR015300DNA-binding pseudobarrel domain
PfamPF023626.8E-1810104IPR003340B3 DNA binding domain
SMARTSM010192.7E-2210106IPR003340B3 DNA binding domain
CDDcd100175.32E-1910103No hitNo description
Gene3DG3DSA:2.40.330.108.9E-16200292IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-14201286IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.729205304IPR003340B3 DNA binding domain
CDDcd100175.09E-7206302No hitNo description
SMARTSM010192.0E-12208304IPR003340B3 DNA binding domain
PfamPF023626.7E-10212294IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MVETGKDLEF FKVFLPEFSS HELVIPPAFI DLLLGKPLPT EVFLLDEIGR LWRVETETED  60
TDERFCVLFK KGWESFAKDQ SLEFGDFLVF RYDGDSRFSV TIFAQDGIKK DVCVVTTTEG  120
SRVSVDNEPV DDIFTKPESR KDCGNKRKRE HDSVNDKPDQ YESTSKTKPE HRDKTQRTVN  180
RAGDPCDISW FPEDGVEESV YKPKNPHFLR NITSSSYQKL EIPTTFLKSN GIELEEELEL  240
RDEDGKKWPL KVENHGRGQK FSFATWSCFC KSQKLRKNHK FLLEFIVPRS GRCNEIQVRV  300
ISGRLPTTMT TNKYQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g103950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010446288.10.0PREDICTED: putative B3 domain-containing protein At5g66980
SwissprotQ9FGD21e-159Y5698_ARATH; Putative B3 domain-containing protein At5g66980
TrEMBLD7MLD41e-165D7MLD4_ARALL; Transcriptional factor B3 family protein
STRINGXP_010446288.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128022130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-149B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]