PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g103930.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Nin-like

Protein Properties

Length: 161aa MW: 18980.2 Da PI: 10.7323

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g103930.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.6	1.9e-26	41	90	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++s e++++yF++pi++AAkeL+++ T+LK++CR++GI+RWPhRk++sl Csa11g103930.1 41 SRLSREMMKQYFYMPIAKAAKELNIGITLLKKKCRELGIPRWPHRKLSSL 90 67999******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.428	26	110	IPR003035	RWP-RK domain
Pfam	PF02042	2.0E-21	43	90	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MGDPNSEKIC YENDNTKTLK ETRSQKRIIV KRRYREDMVS SRLSREMMKQ YFYMPIAKAA 60 KELNIGITLL KKKCRELGIP RWPHRKLSSL NTLITNLKDS LRNTEETNKS KLRNALELLE 120 MEKKMIEEVP DLTFGEKTKR LRQACFKANY KRRRVFSSSS *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	154	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g103930.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB026640	1e-65	AB026640.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10.
GenBank	CP002688	1e-65	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019088062.1	1e-112	PREDICTED: protein RKD3-like
Swissprot	Q9FGD1	4e-85	RKD3_ARATH; Protein RKD3
TrEMBL	R0GPV5	1e-86	R0GPV5_9BRAS; Uncharacterized protein
STRING	XP_010444707.1	1e-112	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12180	19	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	3e-76	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]