PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g102320.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 287aa    MW: 32162.5 Da    PI: 8.6303
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g102320.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.5e-20111160255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr++  +g+WvAeIr p++   r+r +lg+f taeeAa a+++a+ k++g
  Csa11g102320.1 111 LYRGVRQRQ-WGKWVAEIRLPKN---RTRLWLGTFETAEEAALAYDQAAHKIRG 160
                     59****999.**********965...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.82E-34110169No hitNo description
SMARTSM003801.6E-37111174IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-22111168IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-32111169IPR001471AP2/ERF domain
PROSITE profilePS5103223.156111168IPR001471AP2/ERF domain
PfamPF008471.2E-13112160IPR001471AP2/ERF domain
PRINTSPR003672.7E-11112123IPR001471AP2/ERF domain
PRINTSPR003672.7E-11134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MAIALNMNGY IDEFTKALEP FMKVSSSSST SSSNPKTLTP NFITDNNQVL PVSNQPGPIG  60
LNQLTPTQIL QIQTELHLRH NHQSRRRSGH LLTAKPTPMK KTDVATKPVK LYRGVRQRQW  120
GKWVAEIRLP KNRTRLWLGT FETAEEAALA YDQAAHKIRG DNARLNFPNI AIQGDYYKHT  180
LSPSIKAKIE SICNNSDLLP LPQAQLKKQA KTEDVFSGFL YTGPKPEKEP DFEDKFGSGF  240
SGSSPESDIT LLDFSSDCMK EDESLLMGLH KYPSLEIDWD ALEKLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22110168160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g102320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444489.10.0PREDICTED: ethylene-responsive transcription factor ERF057-like
SwissprotQ9FJQ21e-158ERF57_ARATH; Ethylene-responsive transcription factor ERF057
TrEMBLR0EY311e-161R0EY31_9BRAS; Uncharacterized protein
STRINGXP_010444489.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134991728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65130.11e-115ERF family protein
Publications ? help Back to Top
  1. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]