PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g100160.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 447aa    MW: 50221.4 Da    PI: 5.7158
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g100160.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH43.84.1e-14111133426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     e C+f++rtG CkyG++CkF+H+
  Csa11g100160.1 111 EDCSFYMRTGSCKYGSSCKFNHP 133
                     89********************9 PP
2zf-CCCH31.92.3e-10159180526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++++rtG CkyG++C+F+H 
  Csa11g100160.1 159 ECKYYFRTGGCKYGESCRFSHM 180
                     6********************6 PP
3zf-CCCH38.81.5e-12202226226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C+f++r+G Ck+G+ CkF+H+
  Csa11g100160.1 202 GEKECPFYMRNGSCKFGSDCKFNHP 226
                     7899********************9 PP
4zf-CCCH19.81.4e-06347372227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C ++++tG Ck+  +Ck++H++
  Csa11g100160.1 347 DQPECTYYLKTGDCKFKYKCKYHHPK 372
                     689*********************96 PP
5zf-CCCH32.91.1e-10393417226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C +++r+G+Ck+G+ C+F H+
  Csa11g100160.1 393 DQSMCTHYSRYGICKFGPACRFDHS 417
                     5678********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.03E-6105135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.159107135IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6107134IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-11111133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-6113133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.051154182IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4154181IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-6154183IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-8159180IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-7160182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.286200228IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6200227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6202227IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-10202226IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4206225IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.112345373IPR000571Zinc finger, CCCH-type
SMARTSM003560.079345372IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-5349375IPR000571Zinc finger, CCCH-type
PfamPF146080.45351371No hitNo description
PROSITE profilePS5010314.906391419IPR000571Zinc finger, CCCH-type
SMARTSM003560.019391418IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6392419IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-5395417IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-7397417IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MTKPEEISDP DPKQPSRSSS DEVTVAVADR DRSDQNQVTE ELSDQFRNVG LDDDSANERS  60
VPISGYEEGN VETELRALGN DQKEEEEEDR SERESNVEKR MIVYPVRPDA EDCSFYMRTG  120
SCKYGSSCKF NHPVRRRPQI GREKVREREE DVDNLKLMEC KYYFRTGGCK YGESCRFSHM  180
KEQTSLASRP ELNFLGLPIR PGEKECPFYM RNGSCKFGSD CKFNHPDPTA IGGVDSPMFR  240
GNNGGSVGSF SPKAPPPQVS STSWSSSRHM NGTGTAPFIP AMFPQNRGVS SPQASEWNGY  300
QASSPYPPER NVLPPSTYSM NNSMAETSTF SQYQQQISVE EFPERPDQPE CTYYLKTGDC  360
KFKYKCKYHH PKNRLPKQAP SSFNDKGLPL RPDQSMCTHY SRYGICKFGP ACRFDHSIPP  420
TFSSSSSLTV EGPQPGANGN EDDSWH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g100160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2287900.0AK228790.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-10-O16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444209.10.0PREDICTED: zinc finger CCCH domain-containing protein 67-like
SwissprotQ5RJC50.0C3H67_ARATH; Zinc finger CCCH domain-containing protein 67
TrEMBLR0F1G10.0R0F1G1_9BRAS; Uncharacterized protein
STRINGXP_010444209.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.10.0C3H family protein