PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g094320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ZF-HD | ||||||||
Protein Properties | Length: 172aa MW: 18845.4 Da PI: 8.4986 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102 | 3.9e-32 | 21 | 76 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 + Y+eClkNhA+slGgha+DGCgEf+p+++++ +++ +l+C ACgCHRnFHRr+++ Csa11g094320.1 21 LLYNECLKNHAVSLGGHALDGCGEFIPKSTTTlTDPPSLRCDACGCHRNFHRRSPS 76 68**************************99999********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-33 | 8 | 86 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.2E-26 | 22 | 74 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.8E-32 | 23 | 74 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.679 | 23 | 74 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-8 | 133 | 169 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MHYYSTITTN NIDTGAGDMV LLYNECLKNH AVSLGGHALD GCGEFIPKST TTLTDPPSLR 60 CDACGCHRNF HRRSPSDVFS HCWSPPPVPC PGLSGFKASL TLEPLASTPH LLLSPSSFSG 120 PSNQEDKNKF TVAKEDRSAM MKKRKRTKLT VDQKEKMRGF AERAGWIFEN A* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 146 | KKRKRT |
2 | 141 | 148 | KKRKRTKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g094320.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB011483 | 3e-66 | AB011483.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUF9. | |||
GenBank | CP002688 | 3e-66 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010483696.1 | 4e-91 | PREDICTED: zinc-finger homeodomain protein 12-like | ||||
Swissprot | Q9FKJ9 | 6e-71 | ZHD12_ARATH; Zinc-finger homeodomain protein 12 | ||||
TrEMBL | A0A178UPU6 | 8e-69 | A0A178UPU6_ARATH; ZHD12 | ||||
STRING | XP_010483696.1 | 1e-90 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5166 | 25 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60480.1 | 7e-58 | homeobox protein 26 |