PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g094050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 137aa MW: 15964.5 Da PI: 9.2257 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.5 | 1.2e-13 | 17 | 109 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 ffkv + + l lp +f + ++k +k +++++ g+ W++ + rk+ g +v+ +GWk+ vk+ gLk g+f+ F +dg+ +f++ Csa11g094050.1 17 FFKVY--LPDESGDDLELPISFNSF--LPKSLPKSVMVRSIYGNIWKMAF--RKCCGDierFVMVNGWKKIVKEVGLKGGEFLEFDFDGSWCFNF 105 67777..445555669999999743..55679999***************..666666666***************************9999977 PP EEEE CS B3 93 vvkv 96 +v Csa11g094050.1 106 CVYG 109 7765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.73E-17 | 12 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.3E-14 | 13 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.856 | 15 | 111 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.79E-10 | 15 | 108 | No hit | No description |
Pfam | PF02362 | 9.9E-12 | 17 | 109 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-9 | 17 | 111 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MRTMNKGNCV DGRLPKFFKV YLPDESGDDL ELPISFNSFL PKSLPKSVMV RSIYGNIWKM 60 AFRKCCGDIE RFVMVNGWKK IVKEVGLKGG EFLEFDFDGS WCFNFCVYGR SFREDNRQYL 120 DNYMNPFFTV KKKDAK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g094050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB026632 | 3e-87 | AB026632.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15L12. | |||
GenBank | CP002688 | 3e-87 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019095666.1 | 1e-67 | PREDICTED: B3 domain-containing protein At5g60142-like, partial | ||||
Swissprot | Q9LST3 | 6e-61 | Y5142_ARATH; B3 domain-containing protein At5g60142 | ||||
TrEMBL | D7MT70 | 1e-66 | D7MT70_ARALL; Uncharacterized protein | ||||
STRING | scaffold_802657.1 | 2e-67 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4947 | 18 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60142.1 | 2e-63 | B3 family protein |