PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g094030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 200aa MW: 22668.2 Da PI: 8.7188 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.3 | 2.1e-16 | 14 | 104 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 ffkv + + l +p +f++ k+ +kt+t+++ sg sWe+ + rk+sg +vl +GWk+ +k+ Lk gDf+ F++dg + f Csa11g094030.1 14 FFKVY--LPDESGDDLKIPISFTSFVP--KPFPKTVTVRSISGSSWELAF--RKCSGDvesFVLVNGWKRIAKDEYLKGGDFLEFEFDGFRHF-- 100 67777..44555667*******96665..56999****************..888887778*************************9876666.. PP EEEE CS B3 93 vvkv 96 ++ + Csa11g094030.1 101 NFCI 104 5554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.9E-17 | 7 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.92E-18 | 7 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.308 | 12 | 108 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.59E-14 | 12 | 105 | No hit | No description |
SMART | SM01019 | 1.6E-13 | 14 | 108 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-14 | 14 | 105 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.0E-8 | 111 | 184 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-5 | 113 | 196 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MNKGNSSDDC LPKFFKVYLP DESGDDLKIP ISFTSFVPKP FPKTVTVRSI SGSSWELAFR 60 KCSGDVESFV LVNGWKRIAK DEYLKGGDFL EFEFDGFRHF NFCIYERETM CKRLIPAQVI 120 KDYGLHFPES ITIVDPLAKK FGTLEKQIKI QTNGTVFVKG FGSIIRRNNV KTTDKVICEI 180 MKTGDSNLVQ TMKIHILSE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 5e-13 | 4 | 111 | 1 | 104 | At1g16640 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g094030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB019231 | 2e-77 | AB019231.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MGO3. | |||
GenBank | CP002688 | 2e-77 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | DQ056730 | 2e-77 | DQ056730.1 Arabidopsis thaliana transcriptional factor B3 family protein (At5g60130) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010443804.1 | 1e-78 | PREDICTED: B3 domain-containing protein At5g60130-like | ||||
Swissprot | Q9LVG1 | 4e-53 | Y5013_ARATH; B3 domain-containing protein At5g60130 | ||||
TrEMBL | D7MT68 | 1e-101 | D7MT68_ARALL; Uncharacterized protein | ||||
STRING | scaffold_802655.1 | 1e-102 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4947 | 18 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60130.1 | 2e-45 | B3 family protein |
Publications ? help Back to Top | |||
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