PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g093170.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WOX
Protein Properties Length: 256aa    MW: 28620.8 Da    PI: 9.5245
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g093170.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.91e-191473357
                    --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    +R+++tk+q++ Le+l+++  r+psa+++++++ +l    +++ ++V++WFqN++a+ ++
  Csa11g093170.1 14 SRWNPTKDQITLLENLYKQgIRTPSADQIQQITGRLraygHIEGKNVFYWFQNHKARLRQ 73
                    8*****************99*************************************996 PP
2Wus_type_Homeobox113.41.2e-361275265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +++RW+Pt++Qi++Le+lyk+G+rtP++++iq+it +L++yG+ie+kNVfyWFQN+kaR rqkq
     Csa11g093170.1 12 SSSRWNPTKDQITLLENLYKQGIRTPSADQIQQITGRLRAYGHIEGKNVFYWFQNHKARLRQKQ 75
                       689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.867974IPR001356Homeobox domain
SuperFamilySSF466894.71E-121080IPR009057Homeodomain-like
SMARTSM003896.1E-51178IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.6E-71473IPR009057Homeodomain-like
PfamPF000462.2E-171473IPR001356Homeobox domain
CDDcd000864.31E-61575No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEYEGNAGSN ASSSRWNPTK DQITLLENLY KQGIRTPSAD QIQQITGRLR AYGHIEGKNV  60
FYWFQNHKAR LRQKQKQERI TYFNRLLHKT SRFFHPPPCS NGTPYYLQQV GDHHIHQHGN  120
VYGNNLLHRN NVVIPSGGYE KRTITDHKKQ QLADITARTT RMSMSSRFDR FALCDHFDGE  180
GINVNSGGRK TLPLFPLQPS HGTSDAGAGN SCFAPGSDIP VVCFGDDGGR EQPFMIDFFS  240
GGGSSSRFDN NGNAL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in embryonic patterning. Required for apical embryo development after fertilization. Its specific localization to the apical daughter cell of the zygote, while WOX8 is confined to the basal cell, suggests that the asymmetric division of the plant zygote separates determinants of apical and basal cell fates. {ECO:0000269|PubMed:14711878}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g093170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010443686.10.0PREDICTED: WUSCHEL-related homeobox 2-like
SwissprotQ6X7K11e-134WOX2_ARATH; WUSCHEL-related homeobox 2
TrEMBLA0A178U8J71e-134A0A178U8J7_ARATH; WOX2
STRINGXP_010443686.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69142844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.11e-126WUSCHEL related homeobox 2
Publications ? help Back to Top
  1. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  2. Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S
    WUSCHEL-RELATED HOMEOBOX 2 is important for protoderm and suspensor development in the gymnosperm Norway spruce.
    BMC Plant Biol., 2016. 16: p. 19
    [PMID:26786587]
  3. Zhang Z,Tucker E,Hermann M,Laux T
    A Molecular Framework for the Embryonic Initiation of Shoot Meristem Stem Cells.
    Dev. Cell, 2017. 40(3): p. 264-277.e4
    [PMID:28171749]