PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g093080.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 275aa    MW: 31909.7 Da    PI: 6.0323
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g093080.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM583.3e-18121363118
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkya....tgkrknra.....tksgyWka 85 
                      G++F+Pt+ e+++ yL + ++g+++e   +i   d+y  ePw L++ +++   +e+ewy+ +++ + ++     gk ++r+     +++g W+a
  Csa11g093080.1  12 EGLHFDPTEPEVINSYLIPMLRGEPMED--FIVVKDVYAKEPWLLDH-INHpflKEDEWYYVTPKTQISKekvgCGKYSKRKiigdgIDRGNWHA 103
                     599**********************766..788889*********83.333345889*****999876653333566777755666666999*** PP

             NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgek 118
                      g++  + +++g+++g+k+ +++++++++k +k
  Csa11g093080.1 104 NGTEDIIDEETGKVIGVKQKFTYHSASKNKNKK 136
                     ***9999999**************888877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.44310158IPR003441NAC domain
SuperFamilySSF1019413.66E-2112158IPR003441NAC domain
PfamPF023653.4E-713133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MTTENDYYEE DEGLHFDPTE PEVINSYLIP MLRGEPMEDF IVVKDVYAKE PWLLDHINHP  60
FLKEDEWYYV TPKTQISKEK VGCGKYSKRK IIGDGIDRGN WHANGTEDII DEETGKVIGV  120
KQKFTYHSAS KNKNKKHRRG DVGSVSVDGV VLCKIHKKKW SEKKKKKEKK KDHHHEEDKL  180
DQELVDVVPC KVHKKRNSKK KKEKDHGEEA STSSNHDQHD DDSSSFWEQQ KKEALGGEKV  240
DEQVEAMETE RFEDWIKELL GSENICDQDL FSIP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194202KRNSKKKKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g093080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010485233.11e-146PREDICTED: NAC domain-containing protein 35-like
TrEMBLR0GU201e-65R0GU20_9BRAS; Uncharacterized protein
STRINGXP_010485233.11e-146(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.11e-11NAC domain containing protein 88