PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g092840.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 290aa    MW: 33798.6 Da    PI: 5.4864
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g092840.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.55.3e-19121603128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkya....tgkrknra.....tksgyWka 85 
                      G++F+Pt  e+++ yLk+ ++g+++e   +i   d+y  ePw L+++ ++   +e ewy+ +++ + ++     gk ++r+     +++g W+a
  Csa11g092840.1  12 EGLHFDPTGPEVINSYLKPLLRGEPMED--FIVVKDVYAKEPWLLDHT-NHpflKEGEWYYVTRKTQISKekvgCGKYSKRKiigdgIDRGNWNA 103
                     599**********************766..788889*********842.22344777***99998776553333566777755666666999*** PP

             NAM  86 tgkdkevlskkgelvglkktLvfykgrapkge..............ktdWvmheyrl 128
                      gk+  + +++g+++g+k+ +++++++++k +              + +W+m+e+rl
  Csa11g092840.1 104 NGKEDIIDEETGKVIGIKQNFTYHRASKNKKQkrgdgssvsidvpcNESWIMDEFRL 160
                     ***9999999**************543333332333556666666678899999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.25810176IPR003441NAC domain
SuperFamilySSF1019411.44E-2412176IPR003441NAC domain
PfamPF023652.2E-1113160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MTTENDYYEE DEGLHFDPTG PEVINSYLKP LLRGEPMEDF IVVKDVYAKE PWLLDHTNHP  60
FLKEGEWYYV TRKTQISKEK VGCGKYSKRK IIGDGIDRGN WNANGKEDII DEETGKVIGI  120
KQNFTYHRAS KNKKQKRGDG SSVSIDVPCN ESWIMDEFRL PTDTFQDTVL CKIHKKKWSE  180
KKKKKEKEND HHEEDKLDQE LVVPPKIHKK RNFKKKKEKD HHEEASTSTN HDQHDDESSS  240
SSSFWEQQKK EALGGEKVNE QVEAMETERY EDWIEELLLG SDQDLLSIP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209217KRNFKKKKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g092840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019087670.10.0PREDICTED: protein SOMBRERO-like
TrEMBLR0GU204e-79R0GU20_9BRAS; Uncharacterized protein
STRINGXP_010485226.11e-168(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.11e-11NAC domain containing protein 88