PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g091940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 222aa MW: 25526.5 Da PI: 5.7222 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.6 | 5.3e-19 | 79 | 168 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v + +l lp +f+ ++ ++ e+++++lede+g+++e +i +k++ l++GWk+F+ +++L++gD ++F+l++ ++f ++ Csa11g091940.1 79 FVKSMVRSHVYSCFWLGLPSRFCVDNFSE--ETIDVVLEDEEGEEYEAVYIGKKSG----LSGGWKKFALDHKLDDGDALLFELVEPNRF--KIY 165 89************************866..6779***************544444....9**********************9987777..888 PP EE- CS B3 96 vfr 98 vfr Csa11g091940.1 166 VFR 168 887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.1E-20 | 74 | 169 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.75E-22 | 74 | 170 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.47E-19 | 77 | 168 | No hit | No description |
Pfam | PF02362 | 1.6E-17 | 79 | 169 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.169 | 79 | 170 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.0E-26 | 79 | 170 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MAYEEARKLR LQENHKRFQV DVETGRTLDL RRSRRNSSWA NYIARPEHEC KFASEEEKVG 60 ALNAAEEFQS CLVSPHPCFV KSMVRSHVYS CFWLGLPSRF CVDNFSEETI DVVLEDEEGE 120 EYEAVYIGKK SGLSGGWKKF ALDHKLDDGD ALLFELVEPN RFKIYVFRGN ENAHLTSAGK 180 RGRTKQSEEE DKDVDEDSSD EEYILRTTKR SSARLLSKRK A* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g091940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB019228 | 2e-59 | AB019228.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCK7. | |||
GenBank | CP002688 | 2e-59 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010453458.1 | 1e-132 | PREDICTED: putative B3 domain-containing protein At5g58280 | ||||
Swissprot | Q9FHB2 | 1e-102 | Y5828_ARATH; Putative B3 domain-containing protein At5g58280 | ||||
TrEMBL | R0GRK8 | 1e-109 | R0GRK8_9BRAS; Uncharacterized protein | ||||
STRING | XP_010443546.1 | 1e-154 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16141 | 12 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 1e-87 | B3 family protein |
Publications ? help Back to Top | |||
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