PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g091320.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 318aa    MW: 36520.8 Da    PI: 4.7895
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g091320.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.61.7e-1613103198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     f+k++  +++  s+rlv+p+ + + +   ++ ++  +l+  +g+ W+ +   + ++++ + +++GW++Fv++ngL ++Df++F++dg+++f  +v
  Csa11g091320.1  13 FLKIF--NSHEHSRRLVIPRGYKQYYP--NPLPQIAVLKRAEGNFWTARW--TISQEEtISFQEGWEKFVRDNGLIDRDFLLFTYDGSRSF--WV 99 
                     66777..55566668******974444..458889***************..555555599************************998888..99 PP

                     EEE- CS
              B3  95 kvfr 98 
                     +++r
  Csa11g091320.1 100 RIHR 103
                     9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.51E-199103IPR015300DNA-binding pseudobarrel domain
CDDcd100173.60E-1511103No hitNo description
PROSITE profilePS5086312.5911105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-1711103IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.8E-1413105IPR003340B3 DNA binding domain
PfamPF023625.4E-1513103IPR003340B3 DNA binding domain
SuperFamilySSF1019365.3E-5221313IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.2E-4221313IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.66226316IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MALETGFPPF PDFLKIFNSH EHSRRLVIPR GYKQYYPNPL PQIAVLKRAE GNFWTARWTI  60
SQEETISFQE GWEKFVRDNG LIDRDFLLFT YDGSRSFWVR IHRDGLPLEP SCPIKIQEIS  120
DDEDETVGDG DGRDHHMEEG DSHENTIVSL SLGSSDDING DNEDDDEDDE DDDDGDDDDE  180
DTATCVVNKA SGSCSKKARR VKKIRATSLA DSVKVQMYLE NPKNPFFIST SSCSRRVLVI  240
SMQAIKDFNL KFQNRINLVD DFGLLKRKVG KWKDRVVVYK WDEMYNRNKT KPGDIIICEI  300
LREGDVVRTI KVHFVKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-13131021199At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g091320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010443478.10.0PREDICTED: B3 domain-containing protein At5g57720-like isoform X1
SwissprotQ9FHH11e-146Y5772_ARATH; B3 domain-containing protein At5g57720
TrEMBLR0EWE21e-161R0EWE2_9BRAS; Uncharacterized protein
STRINGXP_010443478.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137971723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57720.11e-138B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]