PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g089590.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | WRKY | ||||||||
Protein Properties | Length: 700aa MW: 75565.3 Da PI: 6.1855 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.3 | 1.2e-31 | 274 | 331 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK vkgse+prsYY+Ct ++C+vkkkvers+ +++++ei+Y+g Hnh+k Csa11g089590.2 274 EDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVERSR-EGHITEIIYKGAHNHSK 331 8****************************************.***************85 PP | |||||||
2 | WRKY | 103.8 | 9.4e-33 | 494 | 552 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v++tYeg+Hnh+ Csa11g089590.2 494 LDDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHNHD 552 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.1E-28 | 269 | 332 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.1E-25 | 271 | 332 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-34 | 273 | 331 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.25 | 274 | 332 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.0E-24 | 274 | 329 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.0E-36 | 479 | 554 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-28 | 486 | 554 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.136 | 489 | 554 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-37 | 494 | 553 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.1E-25 | 495 | 552 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 700 aa Download sequence Send to blast |
MAGFDENVAV MGEWVPRSPS PGTLFSSLIG EGNSSKPVLE RELSLNHGQV MAVEEDTTTG 60 NHNNDSSLTN VSRGGLCERI AARAGFNAPR LNTESIRSNT NFSIDSGRRS PCLTISSPGL 120 SPATLLESPV FLTNPMAQPS PTTGKFPFLP GFSSNALSSD NAKDEFFDDI GASFTFQSVS 180 RSSSSFFQGT TEMMSVDYGN YINRSSHQPA EEDVKPGSLN IESSNLYGIQ TDPSNQNKAS 240 DATTNTGLDT VDHQEEEEDQ RRGGDSMVGG APAEDGYNWR KYGQKLVKGS EYPRSYYKCT 300 NPNCQVKKKV ERSREGHITE IIYKGAHNHS KPLPNRRSGM QTDGTEQVEQ QQHQQQQQQQ 360 RDSTPTWVSC NNTQQQGGSN VNNVEEGTTG FEYGNQSGSI QAQTGGHYES GDAVVVVDTS 420 STFSNDEDED DRGTHGSVSL GCDGGGGRGG EGEGEESESK RRKLEAYAAE MSGATRAIRE 480 PRVVVQTTSD VDILDDGYRW RKYGQKVVKG NPNPRSYYKC TAPGCTVRKH VERASHDLKS 540 VITTYEGKHN HDVPAARNSS HGGGGTSNGS SGGLAAQSHH YHNGHHHSEQ PRGRFERQVT 600 ATNQSPYGRG PFSFQPHLGP PSGYAFGLGQ TGLANLSIPG LAFGQGKMPG LPHPYMTQPS 660 VGNISEAMMQ RGGMEPKAEP VSDSGQSVYN QIMSRLPQI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-37 | 274 | 555 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 5e-37 | 274 | 555 | 8 | 78 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g089590.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY096493 | 0.0 | AY096493.1 Arabidopsis thaliana putative transcription factor NtWRKY4 (At5g56270) mRNA, complete cds. | |||
GenBank | AY123006 | 0.0 | AY123006.1 Arabidopsis thaliana putative transcription factor NtWRKY4 (At5g56270) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010443277.1 | 0.0 | PREDICTED: probable WRKY transcription factor 2 | ||||
Swissprot | Q9FG77 | 0.0 | WRKY2_ARATH; Probable WRKY transcription factor 2 | ||||
TrEMBL | R0EV69 | 0.0 | R0EV69_9BRAS; Uncharacterized protein | ||||
STRING | XP_010443277.1 | 0.0 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 0.0 | WRKY DNA-binding protein 2 |
Publications ? help Back to Top | |||
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