PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g089530.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 506aa    MW: 55868.4 Da    PI: 4.8673
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g089530.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.0005587109123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C  Cgk+Fs+   L  H r H
  Csa11g089530.1  87 HVCCECGKRFSSGKALGGHKRIH 109
                     79****************99998 PP
2zf-C2H211.10.0012137157323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C  C k F++   L  H+r H
  Csa11g089530.1 137 CCVCYKKFTSMKALYGHMRYH 157
                     *******************99 PP
3zf-C2H211.30.0011349371123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C  C+ksFs+   L  H  +H
  Csa11g089530.1 349 HVCVTCNKSFSSYQALGGHRASH 371
                     79***********9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-484109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.92E-885157No hitNo description
PfamPF139123.9E-786109IPR007087Zinc finger, C2H2
SMARTSM003550.1587109IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7287110IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
SMARTSM003551.9135157IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.704135157IPR007087Zinc finger, C2H2
PfamPF139120.002137158IPR007087Zinc finger, C2H2
PROSITE patternPS000280137157IPR007087Zinc finger, C2H2
SuperFamilySSF576671.07E-7348371No hitNo description
PROSITE profilePS501579.577349376IPR007087Zinc finger, C2H2
SMARTSM003550.38349371IPR015880Zinc finger, C2H2-like
PfamPF139123.0E-10349373IPR007087Zinc finger, C2H2
PROSITE patternPS000280351371IPR007087Zinc finger, C2H2
SuperFamilySSF576671.07E-7413440No hitNo description
SMARTSM003550.23418440IPR015880Zinc finger, C2H2-like
PfamPF139124.3E-13418441IPR007087Zinc finger, C2H2
PROSITE profilePS501578.974418440IPR007087Zinc finger, C2H2
PROSITE patternPS000280420440IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MDQLRGSKTN CKFSLGRPRF GSIKVKIPRI QPEEKGKVVE EDDQAKNFRL EEESEEEDDH  60
DQAKSMDLEE GGVEEEEEED EEKKKHHVCC ECGKRFSSGK ALGGHKRIHA QYSVVQRPKM  120
VSGMVGRSER GELEVACCVC YKKFTSMKAL YGHMRYHPDR GWKGVLPPPP PPLPHPLGNS  180
SSSTLSIDDH DDEFISSDYD DDDFDDDDDD DDDENSELWD NNLESENVVD LKESFKGWST  240
KGKRGRRSDL KVDESDLKDP PQDDMNDANN LLFLATTAEE AANLNVAETS NSHSVEEKDL  300
EMVKKRKKKK KSLSEMEKES SSTHHDHHQL EVVAAAEEGG TAAGVREKHV CVTCNKSFSS  360
YQALGGHRAS HNKVKISENH LARANAEASL LGIEAIVTGL ASAQGSNTSI SSSNNGDHIC  420
NICHKSFPTG QALGGHKRCH WTGPVSTEAA TVAPTAAPTT APAEASSSQA QATEIVQEVK  480
KLKRSFLEFD LNELPPNEDE EEERV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1303307KKRKK
2304310KRKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g089530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010443268.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLR0EWN00.0R0EWN0_9BRAS; Uncharacterized protein
STRINGXP_010443268.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-136C2H2 family protein