PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g086010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 352aa    MW: 39660.6 Da    PI: 6.2853
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g086010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.21.5e-34771692103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++ei++d+ ++ ++sw+ + +sf+++d+ ef++++LpkyFkh+nf+SFvRQLn+YgFkkv++++         weF+++ F+ gkk+ll++
  Csa11g086010.1  77 FLRKTFEIVNDKVTDPVVSWNPTRKSFIIWDSYEFSENLLPKYFKHKNFSSFVRQLNTYGFKKVDSDR---------WEFANEGFQGGKKHLLKN 162
                     9********************999*****************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     ikr++s+
  Csa11g086010.1 163 IKRRRSK 169
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.8E-5173166IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-3174166IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.9E-3575166IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.2E-3077166IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-1777100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-17115127IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340116140IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-17128140IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MTAIPNVGDI ESSASLGQET ATETVTVKGG QTGSGGGSSD DDVVSPTKEE ADAVNLTDSS  60
SPVSFSKLHE IGLITPFLRK TFEIVNDKVT DPVVSWNPTR KSFIIWDSYE FSENLLPKYF  120
KHKNFSSFVR QLNTYGFKKV DSDRWEFANE GFQGGKKHLL KNIKRRRSKS KCNKEASTTG  180
LKKAETEAES LKEDQNCPIR LEVLKLKQQQ EESQDQMVTV QEKIHGVETE QRHMLSFCAK  240
LAKDQRFVER LVRKRKMKQQ RELEVTEFVK KLKLLDDQET QNNLVDVESQ LIIREFMAMA  300
ATTQPDHESD ISMNNNQSGS TRCQLNTEDL LVDVGSMGGK KIDVDVNGRI E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-217416626129Heat shock factor protein 1
5d5v_B7e-217416626129Heat shock factor protein 1
5d5v_D7e-217416626129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159165LKNIKRR
Functional Description ? help Back to Top
Source Description
UniProtSeed-specific transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Seems to be specialized for the developmental expression of heat shock protein (HSP) genes during seed maturation. Activated by ABI3. {ECO:0000269|PubMed:17220197}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g086010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442980.10.0PREDICTED: heat stress transcription factor A-9-like
SwissprotQ9LVW21e-168HSFA9_ARATH; Heat stress transcription factor A-9
TrEMBLR0F1R40.0R0F1R4_9BRAS; Uncharacterized protein
STRINGXP_010442980.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74981940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54070.11e-165heat shock transcription factor A9