PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g083840.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 685aa    MW: 76020.7 Da    PI: 6.6898
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g083840.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-1862116256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      + +++t++q++eLe++F+ +++p++++r eL kkl L+ +q+k+WFqNrR+++k
  Csa11g083840.1  62 TRYHRHTSYQIQELESFFKVCPHPNEKQRLELGKKLTLESKQIKFWFQNRRTQMK 116
                     334567999*******************************************999 PP
2START158.16.7e-502274292206
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT.... CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg.... 88 
                     la ea++el+k+a+++ p+W++ s  e++ +v+              r++g+v  +++ lv  l+d++ +W e+++     a+t+e is+g    
  Csa11g083840.1 227 LAMEAMNELLKLAELDNPLWSSKS--EKEAIVRPAC----------TRETGLVLINSVALVDALMDTN-KWAEMFEcivaVASTVEMISNGsdgs 308
                     5789********************..7777777777..........699*******************.************************** PP

                     ..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHH CS
           START  89 ..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwl 180
                       g lqlm+ae+q++splvp R   f+Ry++q+g+  w++vdvS d ++++++ +s+  ++++pSg++i++ +ng skvtw+eh +++++++h+l
  Csa11g083840.1 309 rnGSLQLMQAEFQVMSPLVPiRQKKFLRYCKQHGDSLWAVVDVSYDINRENESLKSYGGSKRFPSGCIIQDIGNGCSKVTWIEHSEYEESHIHSL 403
                     ****************************************************9****************************************** PP

                     HHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 181 lrslvksglaegaktwvatlqrqcek 206
                     +++l++s++  ga +w+atlqrqce+
  Csa11g083840.1 404 YQPLLGSSVGLGATKWLATLQRQCES 429
                     ************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-1945118IPR009057Homeodomain-like
SuperFamilySSF466893.13E-1852118IPR009057Homeodomain-like
SMARTSM003893.4E-1557122IPR001356Homeobox domain
PROSITE profilePS5007116.81158118IPR001356Homeobox domain
CDDcd000862.80E-1561118No hitNo description
PfamPF000464.1E-1662116IPR001356Homeobox domain
PROSITE profilePS5084840.849217432IPR002913START domain
CDDcd088753.48E-100223428No hitNo description
SuperFamilySSF559616.18E-30224430No hitNo description
SMARTSM002345.1E-37226429IPR002913START domain
PfamPF018521.2E-43227429IPR002913START domain
SuperFamilySSF559613.02E-17454676No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MNGDLDVDMS RGDFNPSFYL ERLKDDEFES RSLSDNDSFD AMSGDENKQE QRPTKKKKKK  60
RTRYHRHTSY QIQELESFFK VCPHPNEKQR LELGKKLTLE SKQIKFWFQN RRTQMKTQLE  120
RHDNVILRQE NEKLRLENSF LKESMRGSLC IDCGGAVIPG EVSFEQHQLR IENAKLKDEL  180
DRICALANRF IGGSISLEPP CNGGIGSQHL PIGNGFSGGT SLMLMDLAME AMNELLKLAE  240
LDNPLWSSKS EKEAIVRPAC TRETGLVLIN SVALVDALMD TNKWAEMFEC IVAVASTVEM  300
ISNGSDGSRN GSLQLMQAEF QVMSPLVPIR QKKFLRYCKQ HGDSLWAVVD VSYDINRENE  360
SLKSYGGSKR FPSGCIIQDI GNGCSKVTWI EHSEYEESHI HSLYQPLLGS SVGLGATKWL  420
ATLQRQCESF TNLLASQDHT GLSLAGTKSI LKLAQRMKLN FYSGITASSV HKWERLNAEN  480
VGQDTRILTR KSLEPSGIVL SAATSLWLPV TQQRLFEFLC DGKCRNQWDI LSNGASMETT  540
LLVPKGQREG SCVSLLRAAG KDQNESSMLI LQETWNDASG ALVVYAPVDI PSMNVVMSGG  600
DSAYVALLPS GFSILPDGSS LSDQINTNGG MVNQESKGCL LTLGFQILVN CLPTAKLNVE  660
SVETVNNLIA CTIHKIRAAL RIPA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15460KKKKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-GCATTAAATGC-3'. {ECO:0000269|PubMed:16778018}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g083840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256031e-170AB025603.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F17P19.
GenBankCP0026881e-170CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019087173.10.0PREDICTED: homeobox-leucine zipper protein HDG7-like
SwissprotQ9LTK30.0HDG7_ARATH; Homeobox-leucine zipper protein HDG7
TrEMBLR0F0C90.0R0F0C9_9BRAS; Uncharacterized protein
STRINGXP_010442739.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52170.10.0homeodomain GLABROUS 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]