PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g083540.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 311aa    MW: 33328.7 Da    PI: 6.6762
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g083540.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.41.5e-3565137374
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.e 74 
                     +k+ +++++hTkv+gR+RR+R++a caar+F+L++eLG+++ ++ti WLl+ a+pai+e+tgt++ +a ++  
  Csa11g083540.1  65 KKRLPTKDRHTKVEGRGRRIRMPAGCAARVFQLTRELGHKSEGETIRWLLERAEPAIIEATGTGTVPAIAVsV 137
                     67889**********************************************************8888844421 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.04870124IPR017887Transcription factor TCP subgroup
PfamPF036343.3E-2970149IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MESNREGKAI REIDENVDQV VTMTNLFDPD PNTNPGLLMK KEQVGFLQPS TTMMMSNSLE  60
PAPKKKRLPT KDRHTKVEGR GRRIRMPAGC AARVFQLTRE LGHKSEGETI RWLLERAEPA  120
IIEATGTGTV PAIAVSVNGT LKIPTTSPND GDGDGDLMKR RKRNCTSNFV DVNEHDSCHS  180
SVTSGLAPIT ASNYGVNIMN VNTQGLVPFW PMGMGMGTAF VTGDPNQMGQ MWAIPTVATA  240
PFLNLGTIPV SSYVSDASPA AVPQMETSGG EGGAAQSLRD FSLEIYDKKE LQFLGGSGNS  300
SPSSSCHNKT *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00007PBMTransfer from 495258Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g083540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256230.0AB025623.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJM18.
GenBankAK1185790.0AK118579.1 Arabidopsis thaliana At5g51910 mRNA for unknown protein, complete cds, clone: RAFL19-81-E01.
GenBankBT0087790.0BT008779.1 Arabidopsis thaliana At5g51910 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442701.10.0PREDICTED: transcription factor TCP19-like
SwissprotQ9LT891e-146TCP19_ARATH; Transcription factor TCP19
TrEMBLR0EXS11e-170R0EXS1_9BRAS; Uncharacterized protein
TrEMBLR0GMZ11e-169R0GMZ1_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010442701.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125832530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.21e-148TCP family protein