PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g083360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 206aa MW: 23187.4 Da PI: 10.0772 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.3 | 5.4e-08 | 28 | 79 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ f+ Lr lP+ ++K ++ + Av +Ik+ q Csa11g083360.1 28 KLLHRNIERQRRQEMAILFASLRNQLPQkY---IKGKRAMSDHVNGAVTFIKDTQ 79 567999**********************77...99999999**********9866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.45E-11 | 23 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.93E-7 | 24 | 83 | No hit | No description |
PROSITE profile | PS50888 | 10.817 | 26 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-8 | 28 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-5 | 28 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MDPCNNPKKT RRQSHMPHVG DETKKEKKLL HRNIERQRRQ EMAILFASLR NQLPQKYIKG 60 KRAMSDHVNG AVTFIKDTQT RIKELSARRD ELKRETGDPT TSQTRSGSGS GSSRSEPATV 120 MVQPCVSGFE VVVTSSASGL EAWPLSRVLE VLHEQGLEVI SSLTARVNER LMYTIQVEVN 180 SFGCFDLAWL QQKLIDELVL STTRH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g083360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493789 | 0.0 | AB493789.1 Arabidopsis thaliana At5g51790 mRNA for hypothetical protein, partial cds, clone: RAAt5g51790. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010442686.1 | 1e-152 | PREDICTED: transcription factor bHLH120 | ||||
Swissprot | Q9FLI0 | 1e-124 | BH120_ARATH; Transcription factor bHLH120 | ||||
TrEMBL | A0A1P8BH39 | 1e-121 | A0A1P8BH39_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein | ||||
STRING | XP_010442686.1 | 1e-152 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2968 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51790.1 | 1e-123 | bHLH family protein |
Publications ? help Back to Top | |||
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