PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g082280.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 296aa    MW: 32888.8 Da    PI: 7.5944
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g082280.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.5e-09156203455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++ +L++l+P +    +k   Ka +L + ++Y++ Lq
  Csa11g082280.1 156 SHSLAERVRREKISERMRTLQKLVPGC----DKVTGKALMLDEIINYVQTLQ 203
                     8*************************9....555****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.01E-10150207No hitNo description
SuperFamilySSF474596.94E-17150217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-16152213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.574152202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-6156203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-10158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MATFSYFQNY PHSLLDPLLF PTPNSSVDIT GIIDQNILHS LPNVSTIEDT SVYPFLDEYN  60
VGKTESDSFK KQANTTKTAT TSSSSCDQLN NGPSTTTTNG KVRRRKIKNN SNSKEGVEGR  120
KRKIQRSEVK EKRGSKEEPP KDYIHVRARR GQATDSHSLA ERVRREKISE RMRTLQKLVP  180
GCDKVTGKAL MLDEIINYVQ TLQNQVEFLS MKLASTSPVV YDSDLDGLIL TSEMGSPDVG  240
TSFTNTMPPT TPIFPSLLDN SILHTHAQLQ EGGGEEKEKF VDRSGFNDNS FCSFP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103122RRKIKNNSNSKEGVEGRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g082280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442572.10.0PREDICTED: transcription factor bHLH137-like
SwissprotQ93W881e-162BH137_ARATH; Transcription factor bHLH137
TrEMBLR0GN381e-177R0GN38_9BRAS; Uncharacterized protein
STRINGXP_010442572.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87962439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-152bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]