PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g077160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | WRKY | ||||||||
Protein Properties | Length: 137aa MW: 15981.1 Da PI: 9.5955 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.7 | 9e-32 | 57 | 115 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk++ fprsYY+Ct++gC+vkk+v+r d+ vv++tY+g H+h+ Csa11g077160.1 57 LDDGYRWRKYGQKAVKNNIFPRSYYKCTHEGCRVKKQVQRLLGDEGVVVTTYQGVHTHP 115 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.3E-33 | 42 | 115 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-29 | 49 | 116 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.816 | 52 | 117 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.7E-37 | 57 | 116 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-25 | 58 | 115 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MEDMYQMFFP CSSSVTKVDN SAHHKINTNE EDKPKSKMKK EREPKFSFQT RSQVDILDDG 60 YRWRKYGQKA VKNNIFPRSY YKCTHEGCRV KKQVQRLLGD EGVVVTTYQG VHTHPVDKPS 120 DNFHHILTQM HISPSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-26 | 47 | 114 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 1e-26 | 47 | 114 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g077160.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC246580 | 1e-99 | KC246580.1 Brassica napus WRKY transcription factor 45.1 (WRKY45.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010442347.1 | 1e-100 | PREDICTED: probable WRKY transcription factor 45 | ||||
Swissprot | Q9S763 | 3e-60 | WRK45_ARATH; Probable WRKY transcription factor 45 | ||||
TrEMBL | A0A087H6A0 | 6e-74 | A0A087H6A0_ARAAL; Uncharacterized protein | ||||
STRING | XP_010442347.1 | 1e-99 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM509 | 28 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01970.1 | 1e-62 | WRKY DNA-binding protein 45 |
Publications ? help Back to Top | |||
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