PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g059970.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TALE
Protein Properties Length: 617aa    MW: 69820.5 Da    PI: 6.9725
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g059970.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.8e-094084451954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  Csa11g059970.1 408 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 445
                     554459******************************88 PP
2BELL97.79.9e-32263337172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeav...aglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     e++elqk+kakLlsllee+++rY +y+eq+++ ++sFea+   +g+g+a++Yt+lA++a+SrhFrcLkd +++q+
  Csa11g059970.1 263 EFMELQKRKAKLLSLLEELKRRYGHYREQMRVAAASFEAAvaaVGVGAAEVYTALASRAMSRHFRCLKDGLVGQV 337
                     679***********************************752227***************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075261.1E-40189333IPR006563POX domain
SMARTSM005741.2E-64195335IPR006563POX domain
PROSITE profilePS5007112.017386449IPR001356Homeobox domain
CDDcd000861.28E-10389450No hitNo description
SMARTSM003895.6E-9389453IPR001356Homeobox domain
SuperFamilySSF466893.04E-17390457IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.8E-28392456IPR009057Homeodomain-like
PfamPF059208.1E-18406445IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MARDQFYGHN HHHHQEQQHQ MINQIQGFDD TNQNPTDHHH YSHQIFGSNS NMGMMIDFSK  60
QQQIRMTSGP DHHHHDQTSG GTDQNHLLED SSSTMRLCNV NNDFPSEVND ERPPQRPSQG  120
LSLSLSSSNP TSISLQPFEL RTQQQQQGYS GKSTHHQNLQ HSQMMMMMMN SHHQNNNHQH  180
HNHHHQFQIG SSKYLSPAQE LLSEFCSLGV KESDEEVMMM KHKKKQKGKQ QEEWDTSHNN  240
NDQHDQSATT SSKKHVPPLH SLEFMELQKR KAKLLSLLEE LKRRYGHYRE QMRVAAASFE  300
AAVAAVGVGA AEVYTALASR AMSRHFRCLK DGLVGQVQAT SQALGEREED NRAVSIAARG  360
ETPRLRLLDQ ALRQQKSYRQ MTLVDAHPWR PQRGLPERAV TTLRAWLFEH FLHPYPSDVD  420
KHILARQTGL SRSQVSNWFI NARVRLWKPM IEEMYCEETR GEQMDITTNP MMIDTKPDPN  480
QIIGVEPESL SSIVTNPTSK TGLKALNSNQ HATTSYGSNF DFSLYGNQAV TYAGEGGPRG  540
DVSLTLGLQQ RNDGNGGVSL ALSPVTAQGG QLYYGSRDHI DQEGPVQYSA SMLDDDQVQN  600
LPYRNLMGAQ LLHDIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-15395453563Homeobox protein Meis2
3k2a_B3e-15395453563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g059970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATU399440.0U39944.2 Arabidopsis thaliana homeobox protein (BEL1) mRNA, complete cds.
GenBankAY0492370.0AY049237.1 Arabidopsis thaliana AT5g41410/MYC6_12 mRNA, complete cds.
GenBankAY0545130.0AY054513.1 Arabidopsis thaliana homeotic protein BEL1 homolog (At5g41410; MYC6.12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010441306.10.0PREDICTED: homeobox protein BEL1 homolog isoform X2
RefseqXP_019088821.10.0PREDICTED: homeobox protein BEL1 homolog isoform X1
SwissprotQ388970.0BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLD7MIV50.0D7MIV5_ARALL; Uncharacterized protein
STRINGXP_010441306.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58662639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.10.0TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]