PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g059640.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 170aa    MW: 19953.2 Da    PI: 4.5169
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g059640.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.81.3e-2091191117
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     lp G+rF+P+d e+ v++L k++ g ++++  v +++ di++ +P+dLp  +++e+++wyf+ k++k+       +++     W  tg+++evl+
  Csa11g059640.1   9 LPIGMRFRPSDLEMAVYFLYKRAFGYQMNARIVPEDChDIFSRHPQDLP-DYEKEDEHWYFYRKKSKSP------TKS--YNLWIPTGEETEVLD 94 
                     699***************************88888889***********.6778899*****9987753......233..348***********9 PP

             NAM  95 k..kgelvglkktLvfykgrapkge 117
                        +++lvg+k++++f +++++++e
  Csa11g059640.1  95 PkkNDKLVGIKHSFAFIENEEEESE 119
                     8667778**********87776654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-236138IPR003441NAC domain
PROSITE profilePS5100522.2079147IPR003441NAC domain
PfamPF023654.7E-810138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MGPVTYNDLP IGMRFRPSDL EMAVYFLYKR AFGYQMNARI VPEDCHDIFS RHPQDLPDYE  60
KEDEHWYFYR KKSKSPTKSY NLWIPTGEET EVLDPKKNDK LVGIKHSFAF IENEEEESEN  120
NGLPDEEETP EYNWYLDEII SVNITYSLRA HVSNHPSTLL NCARIPPEE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g059640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019087992.11e-101PREDICTED: histone acetyltransferase KAT6B-like
TrEMBLR0F6W54e-60R0F6W5_9BRAS; Uncharacterized protein
STRINGXP_010441270.11e-100(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41090.18e-53NAC domain containing protein 95