PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g059580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | TCP | ||||||||
Protein Properties | Length: 229aa MW: 24973.5 Da PI: 10.5445 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 108.1 | 1.3e-33 | 48 | 128 | 2 | 83 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 +kk++++++h kv+gR+RRvRl+++caar+++L++eLG+++d++tieWLlqqa+p+i+ +tg++ ++ ++ +es ++s+ Csa11g059580.1 48 QKKKKPNKDRHLKVEGRGRRVRLPVLCAARIYQLTKELGLKSDGETIEWLLQQAEPSIISATGNGIKPVGAT-TESVVVSQP 128 579*************************************************************77776333.333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 25.794 | 54 | 108 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 3.5E-26 | 54 | 121 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MNNDKNRKQT VVKGFDIVVG DKELKRKTKT KEKEKEEQQQ IQLLGEEQKK KKPNKDRHLK 60 VEGRGRRVRL PVLCAARIYQ LTKELGLKSD GETIEWLLQQ AEPSIISATG NGIKPVGATT 120 ESVVVSQPRP LLTADLMVGH HNTQGGAPTP RSQMAANGLL RWMNETWQNT TQRLFDLNCG 180 FGFGFKGVSE MGFGNNPRPG LELGLSHGSG NVGGFVSAGL SANGSRTV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g059580.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019087527.1 | 1e-138 | PREDICTED: LOW QUALITY PROTEIN: transcription factor TCP6-like, partial | ||||
Swissprot | Q9FLM6 | 8e-69 | TCP6_ARATH; Transcription factor TCP6 | ||||
TrEMBL | D7MIZ9 | 3e-77 | D7MIZ9_ARALL; Uncharacterized protein | ||||
STRING | XP_010445711.1 | 1e-138 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15743 | 14 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41030.1 | 2e-65 | TCP family protein |
Publications ? help Back to Top | |||
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