PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g053940.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 296aa MW: 33393 Da PI: 5.109

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g053940.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	57.5	2.5e-18	35	86	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+e E+rRR++iN++f+ L +++P++ ++++K +Ka+ L +++eYI+ Lq Csa11g053940.1 35 RSKHSETEQRRRSKINERFQSLMDIIPQN--QNDQKRDKASFLLEVIEYIHFLQ 86 899***********************6..4******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.88E-17	31	90	No hit	No description
SuperFamily	SSF47459	6.02E-20	31	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.015	33	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-21	35	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.5E-16	35	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.7E-14	39	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MNSPDLDEQL EAEVYSNLPS RNDSSTVRRN RSSGRSKHSE TEQRRRSKIN ERFQSLMDII 60 PQNQNDQKRD KASFLLEVIE YIHFLQEKVQ MYEGAHQMWF QTQTKLIPWG NNLGSVVEVG 120 DHPQLGKSFS CNDEVAASSG FLLDMQNSVD SDIDPAVSTK IFEHSPISAY VPTEPLPQFV 180 QHDFWQPKPS CGPITCNTNE LVNSEDKTSS SLSTVCSQRV LHTLTESFKS SGVNMSETVI 240 SVQLSLRKRA DREYSVAAFG SEDKCDSIAD EEGNSPTETR SYCKDLNLSE KRIRR*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00534	DAP	Transfer from AT5G38860	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g053940.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010441014.1	0.0	PREDICTED: transcription factor BIM3-like
Swissprot	Q9FMB6	1e-170	BIM3_ARATH; Transcription factor BIM3
TrEMBL	D7MJT9	1e-164	D7MJT9_ARALL; Uncharacterized protein
STRING	XP_010441014.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16131	11	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G38860.1	1e-173	BES1-interacting Myc-like protein 3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]