PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g051880.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Nin-like
Protein Properties Length: 260aa    MW: 29130.7 Da    PI: 5.1615
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g051880.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK67.61.8e-21172216347
          RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhR 47 
                     k++s e +s yF+++i++AAkeL+++lT+LK++CR++GI+RWPh 
  Csa11g051880.1 172 KTLSKEIISLYFYKSITQAAKELNIGLTLLKKRCRELGIQRWPHH 216
                     78999**************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151914.618152245IPR003035RWP-RK domain
PfamPF020426.9E-17173217IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MMMNSFCKLE YDQVFGKEDH SFSFLNHSSL YSHQSELANL FLGLEDDFPP SASSFLALPD  60
CLPSASSFLA LXPVDSDLAN LFFGLEDDFP PSASSFLALP DYLPSASSVL ALPNLDPISI  120
VSLDDLLSGY SSVSWTEEES MLDFDLEKKS ETISTKKRRC REECVSSCSV WKTLSKEIIS  180
LYFYKSITQA AKELNIGLTL LKKRCRELGI QRWPHHQKVQ GKSRTTDQTV SFSCADVRSQ  240
GSREEQNVNL PRISKQHIR*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g051880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0118095e-75AC011809.2 Arabidopsis thaliana chromosome I BAC F6A14 genomic sequence, complete sequence.
GenBankCP0026845e-75CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010445583.11e-113PREDICTED: protein RKD1-like
SwissprotQ9M9U99e-68RKD1_ARATH; Protein RKD1
TrEMBLR0IJY64e-77R0IJY6_9BRAS; Uncharacterized protein
STRINGXP_010445583.11e-112(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39662356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.14e-70RWP-RK domain-containing protein