PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g024760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | LSD | ||||||||
Protein Properties | Length: 95aa MW: 10418.1 Da PI: 9.0301 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 38.4 | 2e-12 | 6 | 29 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Cr lLsY rG++ V+C++C+t Csa11g024760.1 6 CGSCRRLLSYLRGSKQVKCSCCQT 29 ***********************8 PP | |||||||
2 | zf-LSD1 | 46.8 | 4.8e-15 | 44 | 68 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C++C+ lL+YP+GApsVRC++C+ + Csa11g024760.1 44 CNNCKQLLMYPYGAPSVRCSSCNSI 68 **********************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 6.9E-17 | 3 | 33 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-8 | 6 | 29 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 8.2E-12 | 41 | 69 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.6E-13 | 44 | 68 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
MAQMVCGSCR RLLSYLRGSK QVKCSCCQTA NLVLEANQVG QVTCNNCKQL LMYPYGAPSV 60 RCSSCNSITD IRENNKRPPW SEQQGPLKSL SSVR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g024760.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT011760 | 1e-113 | BT011760.1 Arabidopsis thaliana At4g21610 mRNA, complete cds. | |||
GenBank | BT012384 | 1e-113 | BT012384.1 Arabidopsis thaliana At4g21610 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010439449.1 | 1e-63 | PREDICTED: protein LOL2 | ||||
Swissprot | O65426 | 1e-56 | LOL2_ARATH; Protein LOL2 | ||||
TrEMBL | D7MER7 | 9e-56 | D7MER7_ARALL; Uncharacterized protein | ||||
STRING | XP_010439449.1 | 4e-63 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13611 | 22 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 5e-59 | lsd one like 2 |