PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g019380.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GeBP
Protein Properties Length: 338aa    MW: 37095.6 Da    PI: 5.2357
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g019380.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573105.15.3e-33138238198
          DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifel 91 
                     k+fqrl+se+De++lLqG++df++++g +p++d daf+++vkk i+f+++ksq+v+K++rLKkKf + vk+     ks++e++f+k+ ++k+fel
  Csa11g019380.1 138 KMFQRLFSETDEVALLQGVLDFTSTKG-DPYEDSDAFCSYVKKLIDFDATKSQIVTKLQRLKKKFGNTVKNaakkGKSEDEVKFAKDIERKAFEL 231
                     58*************************.9************************************999888766688999*************** PP

          DUF573  92 skkiWgs 98 
                     ++kiWg+
  Csa11g019380.1 232 ARKIWGK 238
                     *****95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.5E-27140237IPR007592Protein of unknown function DUF573
Gene3DG3DSA:2.60.40.7907.5E-24190336IPR008978HSP20-like chaperone
PROSITE profilePS0103117.894223322IPR002068Alpha crystallin/Hsp20 domain
SuperFamilySSF497641.6E-22233330IPR008978HSP20-like chaperone
PfamPF000117.6E-19238337IPR002068Alpha crystallin/Hsp20 domain
CDDcd064641.30E-15239322No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MAPKKAELID NPPVVSSSEE EESGSSGDES DSSAEVSRKD VSSSKKPESD SEGESESESD  60
SEPEPAKKPV VATKAKSDAA SGSAAALPES SKSKRPLKEA EPEANKKLKI SETEHVVKTA  120
KANDNESSKK ISKEDAKKMF QRLFSETDEV ALLQGVLDFT STKGDPYEDS DAFCSYVKKL  180
IDFDATKSQI VTKLQRLKKK FGNTVKNAAK KGKSEDEVKF AKDIERKAFE LARKIWGKKD  240
DALYLRIDMP GLSREDVKLA MEQDTLVIRG EGKYEEDGGD GEGGESGSRK FTSRIGLPEK  300
IYKIDEIKAE MKNGVLKVVV PKMKETERKD VRQIDIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5nms_B9e-16245329159525.3 kDa heat shock protein, chloroplastic
5nms_E9e-16245329159525.3 kDa heat shock protein, chloroplastic
5nms_F9e-16245329159525.3 kDa heat shock protein, chloroplastic
5nms_H9e-16245329159525.3 kDa heat shock protein, chloroplastic
5nms_K9e-16245329159525.3 kDa heat shock protein, chloroplastic
5nms_L9e-16245329159525.3 kDa heat shock protein, chloroplastic
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g019380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010438912.11e-161PREDICTED: GLABROUS1 enhancer-binding protein-like
TrEMBLR0F5W36e-88R0F5W3_9BRAS; Uncharacterized protein
STRINGXP_010438912.11e-161(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92721735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.12e-70DNA-binding storekeeper protein-related transcriptional regulator