PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g019170.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 123aa    MW: 13549.9 Da    PI: 5.8035
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g019170.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.68.1e-072381755
                    HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     s ++ Lr+llP  +   ++K s  + +  Av+YI +Lq
  Csa11g019170.1  2 ASLYASLRSLLPLEF--IQGKRSTLDQVNGAVNYIEYLQ 38
                    5789*********65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.045137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-6346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MASLYASLRS LLPLEFIQGK RSTLDQVNGA VNYIEYLQRN VNDTRCLEIV FSVLQTPLSS  60
VLQVLRECGL CVLGCISSNV NDRLIHTLQA EIQPRTSFAL MPVNDLALID LADLKVALTL  120
MK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g019170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010448440.16e-54PREDICTED: transcription factor bHLH118
SwissprotQ9STJ75e-48BH118_ARATH; Transcription factor bHLH118
TrEMBLA0A178UWK76e-49A0A178UWK7_ARATH; Uncharacterized protein
STRINGXP_010448440.12e-53(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.12e-50bHLH family protein