PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g018210.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HRT-like
Protein Properties Length: 313aa    MW: 34764.7 Da    PI: 9.1652
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g018210.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like55.21.2e-17107136130
        HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                     +CGv+ledG+ C ++P+kgRKRC eHKG+R
  Csa11g018210.1 107 VCGVLLEDGTACITTPIKGRKRCTEHKGKR 136
                     7****************************9 PP
2HRT-like47.43.3e-15162192131
        HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     iCGvil d   C+r+Pv  RKRCe HKGmR+
  Csa11g018210.1 162 ICGVILPDMVRCRRPPVLRRKRCEDHKGMRV 192
                     8*****************************7 PP
3HRT-like31.33.4e-10232259229
        HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGm 29 
                     C +++++G +C+r +  g KRC++HK++
  Csa11g018210.1 232 CEATTNNGLPCTRRASTGSKRCWQHKDK 259
                     9*************************96 PP
4HRT-like45.81e-14279304126
        HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeH 26 
                     iCGv+l +GsvC++ P kgRKRCe H
  Csa11g018210.1 279 ICGVKLYNGSVCEKAPLKGRKRCENH 304
                     8************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MATLGQTESI KYRLRSFGRS IVHRDLLKKL GDTPRKSGLS QTILPITQKK AVNKTEENKH  60
DLAEEREISS DAAEKESNLL LSPSKLQPVS DRHSHDDLVD GSDSASVCGV LLEDGTACIT  120
TPIKGRKRCT EHKGKRLSRV SPVKLIPCEV PTRRECQETD DICGVILPDM VRCRRPPVLR  180
RKRCEDHKGM RVNAFFFLLS PTERDEAVKE DKSKPKTCTG MNQEDSGLNL LCEATTNNGL  240
PCTRRASTGS KRCWQHKDKT VDHGSSSENV QSATTSQVIC GVKLYNGSVC EKAPLKGRKR  300
CENHILKFKA LE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the regulation of cell differentiation in meristems (By similarity). Binds DNA without sequence preference (PubMed:22226340). {ECO:0000250|UniProtKB:F4K933, ECO:0000269|PubMed:22226340}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g018210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0491710.0AL049171.1 Arabidopsis thaliana DNA chromosome 4, BAC clone (ESSA project).
GenBankAL0494830.0AL049483.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20B18 (ESSA project).
GenBankAL1615640.0AL161564.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 64.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019087340.10.0PREDICTED: LOW QUALITY PROTEIN: protein EFFECTOR OF TRANSCRIPTION 1-like, partial
SwissprotF4JU691e-141ET1_ARATH; Protein EFFECTOR OF TRANSCRIPTION 1
TrEMBLR0GZV01e-168R0GZV0_9BRAS; Uncharacterized protein
STRINGXP_010445116.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29542763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26170.11e-133