PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g014730.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 991aa    MW: 108906 Da    PI: 9.2631
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g014730.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.11.8e-14250297355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++hn  E+rRR++iN+++ +L+el+P +      K +Ka++L  ++eY+ks q
  Csa11g014730.1 250 EMHNLSEKRRREKINEKLKTLQELIPGC-----SKKDKASTLDSVIEYVKSVQ 297
                     58*************************9.....799**************987 PP
2HLH35.51.8e-11809855354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++hn +Er+RR++iN++++ L+el+P +     +K + a++Le +++++k+L
  Csa11g014730.1 809 EMHNLAERKRREKINERMNALQELIPGS-----RKSDRASMLEDVIQFVKKL 855
                     58************************98.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-17245313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.104247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.03E-14250301No hitNo description
PfamPF000104.6E-12250297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-18251310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-14253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.98E-13799860No hitNo description
PROSITE profilePS5088816.729806855IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-9809855IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-15809878IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-15810864IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-14812861IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 991 aa     Download sequence    Send to blast
MILGFVVLFE IRGEDDIVEL LWKSGQVVTS SQQTQRLSSG PLPILRGSGS GEGNAPLPQP  60
PPPLHHHHQC LFNQDYFYSG VSTTPATLPQ RSSASMAPPP LSSQYIMTPE RPTGQVLAAR  120
RAENFMNFSI LRGNIFTTGG RDEAGPSMQM SSSATPSSFA IGPCVIPATA EGTKSRVSPT  180
FTVPSRRNEK VAIDQTTVCE IAETKPIQIQ PVTEIAEDRK QKEREETSAE IQGTQEARGS  240
HSRKRSRAAE MHNLSEKRRR EKINEKLKTL QELIPGCSKK DKASTLDSVI EYVKSVQMKE  300
QMKSMEQGMM PPMMSAENTP QLMPHMRMMD MNRPPPLIPF SGTPFPRPPH VAGVGRPSCP  360
APRYPTDPSR VHLQSPQPNS VSNQPQFPTY MNPYSQFVGL HQMQQPTSSL HSQTTSHYFS  420
HASSSKEPGD EGNQSTGCLR FRGEDDLVEL VWKSGQVVQR SHTQRPSSDK PSHPPPPPPP  480
PTILRGSGSG GGGGEENVSL QLPQPQPYMH HQNLFIQEDE MASWLYRSYS QDYFCSELLY  540
NGVASTSATH PQSSVSLAPS PSAPYILPPE RPIAHNLAVT RAENLMNFSW LRRNIYTSDR  600
VEVGQSIPVQ VGSSATTSSL VTFPQSLASL AQLPPSIQYI LTAERPTGQV STNFSRLRGN  660
MFTGGRVEAG PSMEVGSSAT PSSSAIESCV LPPTEGTESR VSGTFAVPGL DRKGKAVAIE  720
TARTPTSGVC KAETEPIQVQ PATEMGVSKD KKRKEREETV AGIQVSHNSD RFKFNLRAHV  780
KFNLSMFRGV QGTEEARGSK SRKRSRAAEM HNLAERKRRE KINERMNALQ ELIPGSRKSD  840
RASMLEDVIQ FVKKLHSQIQ MISRGQDIMP PVTNAGNMQQ FMPQMGMGMM GMNQPPFRPS  900
PKPPHIADPP YPAPHHPFPN IQTSDPSTVH LPTPQPQFPA YMNPYSQFLG PHQMQQPPPP  960
PSQSQTTSQL SVSKASTSKE LEDQDNQPTG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1801818RKRSRAAEMHNLAERKRR
2814819ERKRRE
3815820RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g014730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010438382.10.0PREDICTED: transcription factor bHLH119-like
SwissprotQ9SVU71e-132BH056_ARATH; Putative transcription factor bHLH056
TrEMBLD7MD820.0D7MD82_ARALL; Uncharacterized protein
STRINGXP_010438382.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM90411635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.11e-114bHLH family protein