PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g011760.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 411aa    MW: 46782.5 Da    PI: 8.402
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g011760.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.63.5e-16241011497
                     T-EE--HHH.HTT...---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  14 grlvlpkkfaeeh...ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     + l++p kf++ +   g +  e+kt+ l++  s  sW+v++  ++++    lt GWkeF+ a++L++gD++vF++dg s f  +v+ f
  Csa11g011760.1  24 SYLTIPVKFFSVYlleGRN--EGKTVELRSdASEISWKVEM--EGRR----LTVGWKEFATAHDLRVGDVIVFRHDGASVF--HVTCF 101
                     459*******999*95444..6679999986888*******..8888....************************999999..88776 PP
2B360.92.2e-19193288296
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     f +l++ ++l+++   lpk+f    g+ +e+s++++l+de      ++W++ l++r++sg++++++GW++F+ +n+Lk  D+v+Fkl++++++++
  Csa11g011760.1 193 FVALVSDSNLRNDTRFLPKRFS---GSLTEGSIQIVLMDEGMvegvKTWTLVLKFRNSSGTFYMRDGWRSFCYENELKPDDTVTFKLESKTKETP 284
                     567889999************9...55567899******999*********************************************98877777 PP

                     EEEE CS
              B3  93 vvkv 96 
                      +++
  Csa11g011760.1 285 ILRF 288
                     7665 PP
3B355.51e-17306399698
                     ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
              B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                      +++  +s++  lp +f++ +g+++ e k++tl d++g++W v+l ++k+  ++ l+ G keF kang+k+++++vF+l+++ +++ + +++++
  Csa11g011760.1 306 RNKSGDSSSQKHLPVNFIKVNGMENLERKKMTLLDKHGKEWPVNLVMEKGNTQTRLGLGLKEFFKANGIKANESLVFELVWEdKTTLPILQLCS 399
                     56777888899**********9999999****************************************************99777777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.1E-238106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-229110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.66111104IPR003340B3 DNA binding domain
CDDcd100173.18E-1812101No hitNo description
SMARTSM010193.8E-2314104IPR003340B3 DNA binding domain
PfamPF023629.8E-112598IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-14184287IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-16188286IPR015300DNA-binding pseudobarrel domain
CDDcd100172.87E-14190277No hitNo description
PROSITE profilePS5086313.648192291IPR003340B3 DNA binding domain
SMARTSM010199.6E-17193292IPR003340B3 DNA binding domain
PfamPF023623.5E-17193288IPR003340B3 DNA binding domain
PROSITE profilePS5086311.194301400IPR003340B3 DNA binding domain
SMARTSM010194.5E-15304401IPR003340B3 DNA binding domain
PfamPF023627.5E-17307400IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-14310395IPR015300DNA-binding pseudobarrel domain
CDDcd100176.18E-15312388No hitNo description
SuperFamilySSF1019365.3E-15314395IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MANPVLESPT NPHFFQPLLP GFDSYLTIPV KFFSVYLLEG RNEGKTVELR SDASEISWKV  60
EMEGRRLTVG WKEFATAHDL RVGDVIVFRH DGASVFHVTC FGPSCCEIQY VQSCDHDDNL  120
DDDQENIRNL SMKQSLKTEP ESLLDEDKDY MERLQGLTCR NFMKTGKLPR KKHVKKRIPE  180
AKAKSFSSDP SCFVALVSDS NLRNDTRFLP KRFSGSLTEG SIQIVLMDEG MVEGVKTWTL  240
VLKFRNSSGT FYMRDGWRSF CYENELKPDD TVTFKLESKT KETPILRFST AELKSVSTKD  300
CNKRKRNKSG DSSSQKHLPV NFIKVNGMEN LERKKMTLLD KHGKEWPVNL VMEKGNTQTR  360
LGLGLKEFFK ANGIKANESL VFELVWEDKT TLPILQLCSN TKTCPVIVNS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g011760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019087942.11e-176PREDICTED: B3 domain-containing protein REM5-like isoform X1
SwissprotQ8H2D01e-118REM7_ARATH; B3 domain-containing protein REM7
TrEMBLA0A178UT081e-158A0A178UT08_ARATH; Uncharacterized protein
STRINGCagra.3807s0035.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31660.11e-119B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]