PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g011250.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TALE
Protein Properties Length: 382aa    MW: 43154.3 Da    PI: 6.1976
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g011250.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78.3e-083313642154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp++e++++L +++gL+ +q+ +WF N+R +
  Csa11g011250.1 331 KWPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 364
                     569*****************************87 PP
2ELK26.81.2e-09285306122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++++++++++++E++
  Csa11g011250.1 285 ELKHELKQGFKEKIVDIREEIM 306
                     9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.1E-19120164IPR005540KNOX1
PfamPF037903.8E-17122163IPR005540KNOX1
SMARTSM012563.0E-26171226IPR005541KNOX2
PfamPF037911.4E-19175225IPR005541KNOX2
PROSITE profilePS512139.446285305IPR005539ELK domain
SMARTSM011886.2E-4285306IPR005539ELK domain
PfamPF037892.9E-6285306IPR005539ELK domain
PROSITE profilePS5007111.985305368IPR001356Homeobox domain
SMARTSM003895.6E-10307372IPR001356Homeobox domain
SuperFamilySSF466891.67E-15307371IPR009057Homeodomain-like
CDDcd000863.09E-11308364No hitNo description
Gene3DG3DSA:1.10.10.601.0E-24312370IPR009057Homeodomain-like
PfamPF059201.7E-17325364IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MSFNNSSHLL PPQEDLPLRH FSDQSQQPPP PPQQRHFSET PSLVTASFLN HPSTLATTES  60
DLAPPHRNGD NSAADANPRW LSFHTEIQNT GEVRSEVVDG VNADGETILG VVGGEDWRSA  120
SYKAAILRHP MYEQLLAAHV ACLRVATPVD QIPRIDAQLS QLHTVADKYS TLGVVVDNKE  180
LDHFMSHYVV LLCSFKEQLQ HHVCVHAMEA ITACWEIEQS LQSLTGVSPS ESNGKTMSDD  240
EDDNQVDSEV NMFDGSLDGS DCLMGFGPLV PTERERSLME RVKKELKHEL KQGFKEKIVD  300
IREEIMRKRR AGKLPGDTTS VLKEWWRTHS KWPYPTEEDK AKLVQETGLQ LKQINNWFIN  360
QRKRNWNSNT STSSTLSKNK RK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g011250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3066610.0AF306661.1 Arabidopsis thaliana homeodomain transcription factor KNAT5 (KNAT5) mRNA, complete cds.
GenBankBT0260330.0BT026033.1 Arabidopsis thaliana At4g32040 mRNA, complete cds.
GenBankD439620.0D43962.1 Arabidopsis thaliana mRNA for homeodomein containing protein 1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010437959.10.0PREDICTED: homeobox protein knotted-1-like 5 isoform X1
SwissprotP480020.0KNAT5_ARATH; Homeobox protein knotted-1-like 5
TrEMBLA0A178UZP80.0A0A178UZP8_ARATH; Homeobox protein knotted-1-like 5
TrEMBLA0A178V1Z30.0A0A178V1Z3_ARATH; KNAT5
TrEMBLA0A384LCR40.0A0A384LCR4_ARATH; KNAT5
STRINGXP_010437959.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32040.10.0KNOTTED1-like homeobox gene 5