PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g005630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 275aa MW: 30315.9 Da PI: 6.638 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.3 | 2e-06 | 48 | 92 | 5 | 53 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 + erE+ RRd++++ f eL l ++ +K +K++ L+ +++ +k+ Csa11g005630.1 48 KAEREKLRRDKLKEQFLELGNALDPN----RPKSDKVSLLTDTIQMLKD 92 589********************997....79************99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.79E-12 | 42 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.963 | 43 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.0E-10 | 48 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.6E-5 | 49 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MDQSKKPKAC SESDSSVSSS SSSSTSGHNL RAEMVVVEVN KEAVCSRKAE REKLRRDKLK 60 EQFLELGNAL DPNRPKSDKV SLLTDTIQML KDVMSQVERL KAEYATLSQE SHELIQEKTE 120 LREEKATLKS DIEILNAQYQ HRVRSMVPWI PHYTYPIPVV AITQDQSTFI PYSASVVNPL 180 IEQVPLQKHS SSSSGASSKQ NSKSKSLDQD NDHKYDVGLE LELKIHASSL AQQDVSGKEK 240 KESLTPTAIS SNSYSSSQAV QDSPPGGVND ILKA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g005630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010437385.1 | 0.0 | PREDICTED: transcription factor bHLH11-like isoform X2 | ||||
Swissprot | Q8W2F2 | 1e-133 | BH011_ARATH; Transcription factor bHLH11 | ||||
TrEMBL | R0H1A0 | 1e-142 | R0H1A0_9BRAS; Uncharacterized protein | ||||
STRING | XP_010437385.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2353 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36060.1 | 1e-121 | bHLH family protein |
Publications ? help Back to Top | |||
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