PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g005440.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 245aa    MW: 27379.5 Da    PI: 5.1057
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g005440.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.31e-18170204135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  Csa11g005440.1 170 CSHCGVEKTPQWRMGPLGAKTLCNACGVRFKSGRL 204
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.6E-831243IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.53164200IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.71E-13164226No hitNo description
SMARTSM004012.2E-13164218IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-13168202IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.6E-16170204IPR000679Zinc finger, GATA-type
PROSITE patternPS003440170195IPR000679Zinc finger, GATA-type
CDDcd002022.63E-14170226No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MECVEAFLDD FSVDDLLDLS NADTASAFIR EESSSSQREE EDEQEQERDK GKGFSDQSTR  60
VSPLEDLLSF PSDDVPVGDL EDLEWLSNFV EDSFSESYLS GDFPVSVEVQ RQCVPVKPRS  120
KRRRPNSRVW SLESPSSLLP TAVVGKKKRG RQTEDASSVD GVKQQPRRCC SHCGVEKTPQ  180
WRMGPLGAKT LCNACGVRFK SGRLLTEYRP ACSPTFSTEI HSNSHRKVLE LRLMKTADPG  240
RVTR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g005440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010437363.11e-178PREDICTED: GATA transcription factor 7-like
SwissprotO655151e-130GATA7_ARATH; GATA transcription factor 7
TrEMBLA0A178UWZ01e-128A0A178UWZ0_ARATH; GATA transcription factor
STRINGXP_010437363.11e-178(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146541720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.12e-99GATA transcription factor 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]